Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 AC091799.1-201ENST00000422823 811 ntBASIC16.12■□□□□ 0.17
CDX1P47902 GUSBP6-202ENST00000438529 1198 ntBASIC16.12■□□□□ 0.17
CDX1P47902 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 CDV3P1-201ENST00000471403 739 ntBASIC16.12■□□□□ 0.17
CDX1P47902 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.12■□□□□ 0.17
CDX1P47902 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.12■□□□□ 0.17
CDX1P47902 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.12■□□□□ 0.17
CDX1P47902 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CDX1P47902 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.12■□□□□ 0.17
CDX1P47902 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDX1P47902 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.12■□□□□ 0.17
CDX1P47902 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDX1P47902 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.11■□□□□ 0.17
CDX1P47902 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.11■□□□□ 0.17
CDX1P47902 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CDX1P47902 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDX1P47902 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CDX1P47902 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDX1P47902 RARRES2P4-201ENST00000514074 484 ntBASIC16.11■□□□□ 0.17
CDX1P47902 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.11■□□□□ 0.17
CDX1P47902 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CDX1P47902 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.11■□□□□ 0.17
CDX1P47902 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
CDX1P47902 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.11■□□□□ 0.17
CDX1P47902 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDX1P47902 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.11■□□□□ 0.17
CDX1P47902 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CDX1P47902 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.1■□□□□ 0.17
CDX1P47902 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.1■□□□□ 0.17
CDX1P47902 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 MKRN4P-201ENST00000444706 1521 ntBASIC16.1■□□□□ 0.17
CDX1P47902 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CDX1P47902 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.1■□□□□ 0.17
CDX1P47902 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.1■□□□□ 0.17
CDX1P47902 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.1■□□□□ 0.17
CDX1P47902 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CDX1P47902 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.1■□□□□ 0.17
CDX1P47902 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDX1P47902 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.1■□□□□ 0.17
CDX1P47902 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.09■□□□□ 0.17
CDX1P47902 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
CDX1P47902 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CDX1P47902 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.09■□□□□ 0.17
CDX1P47902 AL032819.2-201ENST00000624543 2162 ntBASIC16.09■□□□□ 0.17
CDX1P47902 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDX1P47902 AC073210.2-201ENST00000430369 194 ntBASIC16.09■□□□□ 0.17
CDX1P47902 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.09■□□□□ 0.17
CDX1P47902 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms