Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DPA1P20036 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DPA1P20036 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 PCDHAC2-203ENST00000615316 3011 ntBASIC20.03■□□□□ 0.8
HLA-DPA1P20036 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 PHGDH-210ENST00000641115 1638 ntBASIC20.03■□□□□ 0.8
HLA-DPA1P20036 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 PNMA6B-201ENST00000538162 1200 ntBASIC20.03■□□□□ 0.8
HLA-DPA1P20036 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.03■□□□□ 0.8
HLA-DPA1P20036 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.03■□□□□ 0.8
HLA-DPA1P20036 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 AC009237.14-201ENST00000609975 1594 ntBASIC20.02■□□□□ 0.8
HLA-DPA1P20036 AP001271.2-201ENST00000624018 1556 ntBASIC20.02■□□□□ 0.8
HLA-DPA1P20036 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DPA1P20036 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HLA-DPA1P20036 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.02■□□□□ 0.79
HLA-DPA1P20036 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.02■□□□□ 0.79
HLA-DPA1P20036 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DPA1P20036 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20■□□□□ 0.79
HLA-DPA1P20036 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20■□□□□ 0.79
HLA-DPA1P20036 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
HLA-DPA1P20036 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20■□□□□ 0.79
HLA-DPA1P20036 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
HLA-DPA1P20036 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 APTR-205ENST00000447009 902 ntTSL 2 BASIC20■□□□□ 0.79
HLA-DPA1P20036 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
HLA-DPA1P20036 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20■□□□□ 0.79
HLA-DPA1P20036 AC006557.6-201ENST00000623071 864 ntBASIC20■□□□□ 0.79
HLA-DPA1P20036 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20■□□□□ 0.79
HLA-DPA1P20036 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DPA1P20036 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DPA1P20036 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.99■□□□□ 0.79
HLA-DPA1P20036 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DPA1P20036 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HLA-DPA1P20036 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.99■□□□□ 0.79
HLA-DPA1P20036 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms