Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.711e-6■■□□□ 13.6
SMNDC1O75940 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.21■□□□□ 0.671e-6■■□□□ 13.6
SMNDC1O75940 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.531e-6■■□□□ 13.6
SMNDC1O75940 MAPK8IP3-203ENST00000561765 2374 ntTSL 1 (best)17.77■□□□□ 0.441e-6■■□□□ 13.6
SMNDC1O75940 MAPK8IP3-207ENST00000564098 4436 ntTSL 215.78■□□□□ 0.121e-6■■□□□ 13.6
SMNDC1O75940 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.237e-7■■□□□ 13.5
SMNDC1O75940 UNC13D-215ENST00000591563 4382 ntTSL 213.29□□□□□ -0.287e-7■■□□□ 13.5
SMNDC1O75940 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC12.9□□□□□ -0.347e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-205ENST00000417753 1744 ntTSL 1 (best)21.01■□□□□ 0.953e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-207ENST00000445633 1733 ntTSL 1 (best)21.01■□□□□ 0.953e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.46■□□□□ 0.873e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.07■□□□□ 0.83e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-213ENST00000490115 1757 ntTSL 1 (best)18.5■□□□□ 0.553e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-208ENST00000452531 1011 ntTSL 516.27■□□□□ 0.23e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.033e-7■■□□□ 13.5
SMNDC1O75940 PFKFB4-203ENST00000412035 567 ntTSL 411.5□□□□□ -0.573e-7■■□□□ 13.5
SMNDC1O75940 CLCN7-212ENST00000567789 577 ntTSL 217.3■□□□□ 0.368e-9■■□□□ 13.5
SMNDC1O75940 IARS-207ENST00000467876 298 ntTSL 34.85□□□□□ -1.632e-15■■□□□ 13.5
SMNDC1O75940 DHX9-201ENST00000367549 4240 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.961e-6■■□□□ 13.5
SMNDC1O75940 IGF2BP3-207ENST00000468263 706 ntTSL 215.44■□□□□ 0.063e-6■■□□□ 13.5
SMNDC1O75940 IGF2BP3-204ENST00000466809 588 ntTSL 514.94□□□□□ -0.023e-6■■□□□ 13.5
SMNDC1O75940 IGF2BP3-203ENST00000465058 534 ntTSL 414.15□□□□□ -0.143e-6■■□□□ 13.5
SMNDC1O75940 IGF2BP3-211ENST00000479504 559 ntTSL 414.15□□□□□ -0.143e-6■■□□□ 13.5
SMNDC1O75940 IGF2BP3-208ENST00000469723 556 ntTSL 57.8□□□□□ -1.163e-6■■□□□ 13.5
SMNDC1O75940 SRRM2-220ENST00000574593 1440 ntTSL 314.21□□□□□ -0.134e-7■■□□□ 13.5
SMNDC1O75940 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.463e-6■■□□□ 13.5
SMNDC1O75940 CDK9-203ENST00000480353 706 ntTSL 213.86□□□□□ -0.193e-6■■□□□ 13.5
SMNDC1O75940 CDK9-204ENST00000491521 510 ntTSL 312.21□□□□□ -0.453e-6■■□□□ 13.5
SMNDC1O75940 HNRNPH1-224ENST00000514731 1371 ntTSL 212.47□□□□□ -0.416e-11■■□□□ 13.5
SMNDC1O75940 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.03■□□□□ 0.89e-12■■□□□ 13.5
SMNDC1O75940 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.399e-12■■□□□ 13.5
SMNDC1O75940 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.82e-7■■□□□ 13.4
SMNDC1O75940 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.492e-7■■□□□ 13.4
SMNDC1O75940 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.722e-7■■□□□ 13.4
SMNDC1O75940 CEP85-202ENST00000451429 4061 ntTSL 2 BASIC11.89□□□□□ -0.512e-12■■□□□ 13.4
SMNDC1O75940 CEP85-205ENST00000469609 2384 ntTSL 1 (best)10.9□□□□□ -0.662e-12■■□□□ 13.4
SMNDC1O75940 CEP85-203ENST00000453146 2821 ntTSL 1 (best)10.2□□□□□ -0.782e-12■■□□□ 13.4
SMNDC1O75940 CEP85-206ENST00000476272 3507 ntTSL 210.09□□□□□ -0.792e-12■■□□□ 13.4
SMNDC1O75940 CEP85-209ENST00000640292 2286 ntAPPRIS ALT1 TSL 5 BASIC9.63□□□□□ -0.872e-12■■□□□ 13.4
SMNDC1O75940 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.122e-12■■□□□ 13.4
SMNDC1O75940 PFKL-208ENST00000491298 819 ntTSL 513.21□□□□□ -0.291e-6■■□□□ 13.4
SMNDC1O75940 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.242e-10■■□□□ 13.4
SMNDC1O75940 DDX39A-207ENST00000588542 1297 ntTSL 317.99■□□□□ 0.476e-8■■□□□ 13.4
SMNDC1O75940 DDX39A-213ENST00000590315 566 ntTSL 511.49□□□□□ -0.576e-8■■□□□ 13.4
SMNDC1O75940 DDX39A-210ENST00000589675 829 ntTSL 310.02□□□□□ -0.816e-8■■□□□ 13.4
SMNDC1O75940 DDX39A-203ENST00000454233 922 ntTSL 3 BASIC9.62□□□□□ -0.876e-8■■□□□ 13.4
SMNDC1O75940 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.242e-6■■□□□ 13.4
SMNDC1O75940 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.45■□□□□ 0.062e-6■■□□□ 13.4
SMNDC1O75940 ABO-201ENST00000453660 6341 ntTSL 1 (best)13.13□□□□□ -0.312e-6■■□□□ 13.4
SMNDC1O75940 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC14.09□□□□□ -0.157e-6■■□□□ 13.4
SMNDC1O75940 AC005381.1-201ENST00000593065 769 ntTSL 3 BASIC10.43□□□□□ -0.747e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.75■□□□□ 0.911e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.71e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.65■□□□□ 0.581e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-201ENST00000322910 2352 ntTSL 218.57■□□□□ 0.561e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-237ENST00000583858 1015 ntTSL 516.5■□□□□ 0.232e-14■■□□□ 13.4
SMNDC1O75940 ACADVL-220ENST00000579546 582 ntTSL 516.18■□□□□ 0.182e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-236ENST00000583850 903 ntTSL 216■□□□□ 0.152e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-214ENST00000578711 1732 nt15.48■□□□□ 0.072e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-204ENST00000542255 1016 ntTSL 515.02■□□□□ -02e-6■■□□□ 13.4
SMNDC1O75940 ACADVL-219ENST00000579425 1234 ntTSL 513.41□□□□□ -0.262e-14■■□□□ 13.4
SMNDC1O75940 ACADVL-239ENST00000585203 947 ntTSL 513.41□□□□□ -0.262e-14■■□□□ 13.4
SMNDC1O75940 ACADVL-216ENST00000578824 720 ntTSL 29.5□□□□□ -0.892e-14■■□□□ 13.4
SMNDC1O75940 ACADVL-213ENST00000578579 458 ntTSL 35.23□□□□□ -1.572e-14■■□□□ 13.4
SMNDC1O75940 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 517.1■□□□□ 0.334e-6■■□□□ 13.4
SMNDC1O75940 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.254e-6■■□□□ 13.4
SMNDC1O75940 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.364e-6■■□□□ 13.4
SMNDC1O75940 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.37□□□□□ -1.554e-6■■□□□ 13.4
SMNDC1O75940 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.86■■□□□ 1.735e-12■■□□□ 13.3
SMNDC1O75940 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.118e-10■■□□□ 13.3
SMNDC1O75940 PTOV1-205ENST00000595934 1880 nt21.59■■□□□ 1.058e-10■■□□□ 13.3
SMNDC1O75940 AHSA2-204ENST00000463681 453 ntTSL 521.01■□□□□ 0.955e-12■■□□□ 13.3
SMNDC1O75940 CAPRIN1-205ENST00000528856 595 ntTSL 520.96■□□□□ 0.951e-7■■□□□ 13.3
SMNDC1O75940 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.888e-10■■□□□ 13.3
SMNDC1O75940 KIAA0100-215ENST00000583403 1271 ntTSL 1 (best)20.03■□□□□ 0.81e-7■■□□□ 13.3
SMNDC1O75940 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.21■□□□□ 0.671e-7■■□□□ 13.3
SMNDC1O75940 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.571e-7■■□□□ 13.3
SMNDC1O75940 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.558e-10■■□□□ 13.3
SMNDC1O75940 PTOV1-209ENST00000597793 1716 ntTSL 1 (best)18.3■□□□□ 0.528e-10■■□□□ 13.3
SMNDC1O75940 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.421e-7■■□□□ 13.3
SMNDC1O75940 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.69■□□□□ 0.425e-12■■□□□ 13.3
SMNDC1O75940 PKP4-205ENST00000426248 4134 ntTSL 1 (best)17.16■□□□□ 0.342e-7■■□□□ 13.3
SMNDC1O75940 PTOV1-203ENST00000594165 986 ntTSL 317.06■□□□□ 0.328e-10■■□□□ 13.3
SMNDC1O75940 PTOV1-213ENST00000600105 635 ntTSL 316.97■□□□□ 0.318e-10■■□□□ 13.3
SMNDC1O75940 HMGN2-205ENST00000466194 952 ntTSL 216.27■□□□□ 0.21e-42■■□□□ 13.3
SMNDC1O75940 EMC8-205ENST00000597291 1826 nt15.57■□□□□ 0.081e-7■■□□□ 13.3
SMNDC1O75940 KIAA0100-205ENST00000577417 1839 ntTSL 1 (best)15.47■□□□□ 0.071e-7■■□□□ 13.3
SMNDC1O75940 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.011e-7■■□□□ 13.3
SMNDC1O75940 POLR3E-217ENST00000569757 662 ntTSL 415.07■□□□□ 01e-7■■□□□ 13.3
SMNDC1O75940 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.085e-12■■□□□ 13.3
SMNDC1O75940 AHSA2-205ENST00000471542 1971 ntTSL 214.51□□□□□ -0.095e-12■■□□□ 13.3
SMNDC1O75940 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.47□□□□□ -0.091e-7■■□□□ 13.3
SMNDC1O75940 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.17□□□□□ -0.148e-10■■□□□ 13.3
SMNDC1O75940 PTOV1-210ENST00000598325 1438 ntTSL 513.61□□□□□ -0.238e-10■■□□□ 13.3
SMNDC1O75940 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.6□□□□□ -0.231e-7■■□□□ 13.3
SMNDC1O75940 POLR3E-215ENST00000565551 645 ntTSL 513.46□□□□□ -0.251e-7■■□□□ 13.3
SMNDC1O75940 KIAA0100-210ENST00000580882 1582 ntTSL 1 (best)13.29□□□□□ -0.281e-7■■□□□ 13.3
SMNDC1O75940 DENND4B-210ENST00000485359 891 ntTSL 213.24□□□□□ -0.291e-7■■□□□ 13.3
SMNDC1O75940 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.321e-7■■□□□ 13.3
SMNDC1O75940 PTOV1-218ENST00000601612 1480 ntTSL 213.04□□□□□ -0.328e-10■■□□□ 13.3
Retrieved 100 of 11,362 protein–RNA pairs in 212 ms