Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.7■□□□□ 0.58
LDB3O75112 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.7■□□□□ 0.58
LDB3O75112 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.7■□□□□ 0.58
LDB3O75112 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.69■□□□□ 0.58
LDB3O75112 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.69■□□□□ 0.58
LDB3O75112 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LDB3O75112 ESRRAP1-201ENST00000400596 1257 ntBASIC18.69■□□□□ 0.58
LDB3O75112 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.69■□□□□ 0.58
LDB3O75112 RPS2P52-201ENST00000469610 820 ntBASIC18.69■□□□□ 0.58
LDB3O75112 AC026366.1-201ENST00000488803 879 ntBASIC18.69■□□□□ 0.58
LDB3O75112 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.69■□□□□ 0.58
LDB3O75112 AC120498.8-201ENST00000614275 531 ntBASIC18.69■□□□□ 0.58
LDB3O75112 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.69■□□□□ 0.58
LDB3O75112 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LDB3O75112 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.69■□□□□ 0.58
LDB3O75112 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
LDB3O75112 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.68■□□□□ 0.58
LDB3O75112 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LDB3O75112 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LDB3O75112 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LDB3O75112 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LDB3O75112 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.68■□□□□ 0.58
LDB3O75112 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.68■□□□□ 0.58
LDB3O75112 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.68■□□□□ 0.58
LDB3O75112 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.68■□□□□ 0.58
LDB3O75112 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.68■□□□□ 0.58
LDB3O75112 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB3O75112 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.68■□□□□ 0.58
LDB3O75112 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LDB3O75112 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.67■□□□□ 0.58
LDB3O75112 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.67■□□□□ 0.58
LDB3O75112 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LDB3O75112 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.67■□□□□ 0.58
LDB3O75112 TSPY20P-201ENST00000450910 630 ntBASIC18.67■□□□□ 0.58
LDB3O75112 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.67■□□□□ 0.58
LDB3O75112 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LDB3O75112 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.67■□□□□ 0.58
LDB3O75112 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB3O75112 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LDB3O75112 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
LDB3O75112 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.66■□□□□ 0.58
LDB3O75112 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB3O75112 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB3O75112 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LDB3O75112 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LDB3O75112 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB3O75112 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB3O75112 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LDB3O75112 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.66■□□□□ 0.58
LDB3O75112 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB3O75112 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB3O75112 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.66■□□□□ 0.58
LDB3O75112 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.66■□□□□ 0.58
LDB3O75112 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LDB3O75112 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.66■□□□□ 0.58
LDB3O75112 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB3O75112 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LDB3O75112 PHGDH-210ENST00000641115 1638 ntBASIC18.66■□□□□ 0.58
LDB3O75112 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.66■□□□□ 0.58
LDB3O75112 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LDB3O75112 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LDB3O75112 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.65■□□□□ 0.58
LDB3O75112 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.65■□□□□ 0.58
LDB3O75112 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB3O75112 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms