Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB3O15347 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGB3O15347 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.97■□□□□ 0.15
HMGB3O15347 SLC47A1P1-202ENST00000449666 945 ntBASIC15.97■□□□□ 0.15
HMGB3O15347 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
HMGB3O15347 AP005435.1-201ENST00000529293 1178 ntBASIC15.97■□□□□ 0.15
HMGB3O15347 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB3O15347 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB3O15347 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HMGB3O15347 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB3O15347 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HMGB3O15347 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGB3O15347 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGB3O15347 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
HMGB3O15347 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB3O15347 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB3O15347 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
HMGB3O15347 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGB3O15347 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB3O15347 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.96■□□□□ 0.15
HMGB3O15347 SMUG1P1-201ENST00000590640 811 ntBASIC15.96■□□□□ 0.15
HMGB3O15347 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGB3O15347 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGB3O15347 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB3O15347 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC15.96■□□□□ 0.14
HMGB3O15347 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB3O15347 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB3O15347 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 AC005332.7-201ENST00000614046 2005 ntBASIC15.95■□□□□ 0.14
HMGB3O15347 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
HMGB3O15347 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 HES6-206ENST00000409574 738 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB3O15347 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC15.95■□□□□ 0.14
HMGB3O15347 SRD5A1P1-201ENST00000442297 786 ntBASIC15.95■□□□□ 0.14
HMGB3O15347 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
HMGB3O15347 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB3O15347 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
HMGB3O15347 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 FLJ16779-201ENST00000612722 7638 ntBASIC15.94■□□□□ 0.14
HMGB3O15347 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 AC092171.4-201ENST00000609130 632 ntBASIC15.94■□□□□ 0.14
HMGB3O15347 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 SYT6-210ENST00000641643 1587 ntBASIC15.94■□□□□ 0.14
HMGB3O15347 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
HMGB3O15347 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB3O15347 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB3O15347 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB3O15347 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB3O15347 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms