Protein–RNA interactions for Protein: Q6P2H8

TMEM53, Transmembrane protein 53, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53Q6P2H8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 RBM17P2-201ENST00000616397 1405 ntBASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TMEM53Q6P2H8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 GABARAPL3-202ENST00000624044 1851 ntBASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TMEM53Q6P2H8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 TERF1P5-201ENST00000477545 1207 ntBASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 AC011767.1-201ENST00000617410 1153 ntBASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TMEM53Q6P2H8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 MFSD11-216ENST00000590393 1141 ntBASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
TMEM53Q6P2H8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 PCDHB18P-201ENST00000524813 2368 ntBASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.09■□□□□ 0.49
TMEM53Q6P2H8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms