Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 AC026310.3-201ENST00000625186 2373 ntBASIC19.12■□□□□ 0.65
COL28A1Q2UY09 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 CYP21A1P-202ENST00000354927 1481 ntBASIC19.11■□□□□ 0.65
COL28A1Q2UY09 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL28A1Q2UY09 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 CYP2D8P-201ENST00000433633 1490 ntBASIC19.1■□□□□ 0.65
COL28A1Q2UY09 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 KRT18P48-201ENST00000434763 852 ntBASIC19.1■□□□□ 0.65
COL28A1Q2UY09 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL28A1Q2UY09 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.09■□□□□ 0.65
COL28A1Q2UY09 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.09■□□□□ 0.65
COL28A1Q2UY09 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.08■□□□□ 0.65
COL28A1Q2UY09 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL28A1Q2UY09 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.08■□□□□ 0.65
COL28A1Q2UY09 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 AC007322.3-201ENST00000426526 701 ntBASIC19.08■□□□□ 0.64
COL28A1Q2UY09 AL390955.1-201ENST00000428694 934 ntBASIC19.08■□□□□ 0.64
COL28A1Q2UY09 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 AC005829.2-201ENST00000571422 1056 ntBASIC19.08■□□□□ 0.64
COL28A1Q2UY09 REXO1L10P-201ENST00000615707 1290 ntBASIC19.08■□□□□ 0.64
COL28A1Q2UY09 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL28A1Q2UY09 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL28A1Q2UY09 FEM1AP4-201ENST00000443167 1987 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms