Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 AC091799.1-201ENST00000422823 811 ntBASIC20.8■□□□□ 0.92
LIG3P49916 TSPY6P-201ENST00000448518 926 ntBASIC20.8■□□□□ 0.92
LIG3P49916 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.8■□□□□ 0.92
LIG3P49916 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.8■□□□□ 0.92
LIG3P49916 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.8■□□□□ 0.92
LIG3P49916 AC008694.1-202ENST00000636953 945 ntBASIC20.8■□□□□ 0.92
LIG3P49916 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LIG3P49916 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.8■□□□□ 0.92
LIG3P49916 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LIG3P49916 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.8■□□□□ 0.92
LIG3P49916 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.8■□□□□ 0.92
LIG3P49916 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.8■□□□□ 0.92
LIG3P49916 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.8■□□□□ 0.92
LIG3P49916 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.79■□□□□ 0.92
LIG3P49916 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIG3P49916 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
LIG3P49916 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
LIG3P49916 AC069236.1-201ENST00000604339 616 ntBASIC20.79■□□□□ 0.92
LIG3P49916 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 AC027702.1-201ENST00000563810 1770 ntBASIC20.79■□□□□ 0.92
LIG3P49916 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIG3P49916 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.78■□□□□ 0.92
LIG3P49916 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
LIG3P49916 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
LIG3P49916 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.78■□□□□ 0.92
LIG3P49916 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LIG3P49916 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
LIG3P49916 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 AL355802.2-201ENST00000402069 882 ntBASIC20.78■□□□□ 0.92
LIG3P49916 GUSBP6-202ENST00000438529 1198 ntBASIC20.78■□□□□ 0.92
LIG3P49916 AL162412.1-201ENST00000567129 965 ntBASIC20.78■□□□□ 0.92
LIG3P49916 AC016405.3-201ENST00000607710 860 ntBASIC20.78■□□□□ 0.92
LIG3P49916 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
LIG3P49916 OR10C1-204ENST00000622521 1039 ntBASIC20.78■□□□□ 0.92
LIG3P49916 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.78■□□□□ 0.92
LIG3P49916 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.78■□□□□ 0.92
LIG3P49916 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIG3P49916 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.78■□□□□ 0.92
LIG3P49916 AC006128.1-201ENST00000624704 1661 ntBASIC20.77■□□□□ 0.92
LIG3P49916 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIG3P49916 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
LIG3P49916 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIG3P49916 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LIG3P49916 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIG3P49916 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.77■□□□□ 0.92
LIG3P49916 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
LIG3P49916 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.77■□□□□ 0.92
LIG3P49916 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LIG3P49916 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.77■□□□□ 0.92
LIG3P49916 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.77■□□□□ 0.92
LIG3P49916 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIG3P49916 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIG3P49916 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
LIG3P49916 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIG3P49916 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.77■□□□□ 0.91
LIG3P49916 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIG3P49916 SLC29A4P1-201ENST00000398760 971 ntBASIC20.76■□□□□ 0.91
LIG3P49916 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIG3P49916 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.76■□□□□ 0.91
LIG3P49916 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.76■□□□□ 0.91
LIG3P49916 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.76■□□□□ 0.91
LIG3P49916 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
LIG3P49916 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
LIG3P49916 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms