Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PDGFRAP16234 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PDGFRAP16234 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 TSPY20P-201ENST00000450910 630 ntBASIC20.88■□□□□ 0.93
PDGFRAP16234 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.88■□□□□ 0.93
PDGFRAP16234 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 AFG3L1P-217ENST00000557444 2447 ntBASIC20.88■□□□□ 0.93
PDGFRAP16234 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.88■□□□□ 0.93
PDGFRAP16234 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFRAP16234 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PDGFRAP16234 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.87■□□□□ 0.93
PDGFRAP16234 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.87■□□□□ 0.93
PDGFRAP16234 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PDGFRAP16234 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.87■□□□□ 0.93
PDGFRAP16234 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.87■□□□□ 0.93
PDGFRAP16234 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.87■□□□□ 0.93
PDGFRAP16234 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFRAP16234 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFRAP16234 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PDGFRAP16234 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.86■□□□□ 0.93
PDGFRAP16234 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PDGFRAP16234 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 ABHD17AP1-201ENST00000358206 933 ntBASIC20.86■□□□□ 0.93
PDGFRAP16234 AL390719.1-204ENST00000412397 1219 ntBASIC20.86■□□□□ 0.93
PDGFRAP16234 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 AC005829.2-201ENST00000571422 1056 ntBASIC20.86■□□□□ 0.93
PDGFRAP16234 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFRAP16234 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFRAP16234 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFRAP16234 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.85■□□□□ 0.93
PDGFRAP16234 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.85■□□□□ 0.93
PDGFRAP16234 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PDGFRAP16234 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.85■□□□□ 0.93
PDGFRAP16234 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.85■□□□□ 0.93
PDGFRAP16234 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.85■□□□□ 0.93
PDGFRAP16234 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.85■□□□□ 0.93
PDGFRAP16234 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
PDGFRAP16234 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 HLA-B-256ENST00000639848 1089 ntBASIC20.85■□□□□ 0.93
PDGFRAP16234 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFRAP16234 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.84■□□□□ 0.93
PDGFRAP16234 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
PDGFRAP16234 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.84■□□□□ 0.93
PDGFRAP16234 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.84■□□□□ 0.93
PDGFRAP16234 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PDGFRAP16234 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.84■□□□□ 0.93
PDGFRAP16234 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.84■□□□□ 0.93
PDGFRAP16234 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFRAP16234 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PDGFRAP16234 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PDGFRAP16234 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms