Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SHOX2O60902 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 KRT16P3-201ENST00000439127 1283 ntBASIC19.93■□□□□ 0.78
SHOX2O60902 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.93■□□□□ 0.78
SHOX2O60902 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.93■□□□□ 0.78
SHOX2O60902 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.93■□□□□ 0.78
SHOX2O60902 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.93■□□□□ 0.78
SHOX2O60902 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SHOX2O60902 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.93■□□□□ 0.78
SHOX2O60902 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.93■□□□□ 0.78
SHOX2O60902 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SHOX2O60902 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.92■□□□□ 0.78
SHOX2O60902 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.92■□□□□ 0.78
SHOX2O60902 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.92■□□□□ 0.78
SHOX2O60902 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
SHOX2O60902 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.92■□□□□ 0.78
SHOX2O60902 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SHOX2O60902 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 AC067852.2-201ENST00000590513 2313 ntBASIC19.92■□□□□ 0.78
SHOX2O60902 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SHOX2O60902 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SHOX2O60902 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
SHOX2O60902 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SHOX2O60902 AC120498.9-201ENST00000339021 3867 ntBASIC19.92■□□□□ 0.78
SHOX2O60902 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHOX2O60902 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.92■□□□□ 0.78
SHOX2O60902 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.91■□□□□ 0.78
SHOX2O60902 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.91■□□□□ 0.78
SHOX2O60902 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SHOX2O60902 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.91■□□□□ 0.78
SHOX2O60902 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.91■□□□□ 0.78
SHOX2O60902 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.91■□□□□ 0.78
SHOX2O60902 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.91■□□□□ 0.78
SHOX2O60902 KRT8P36-201ENST00000489121 1440 ntBASIC19.91■□□□□ 0.78
SHOX2O60902 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SHOX2O60902 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.91■□□□□ 0.78
SHOX2O60902 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.91■□□□□ 0.78
SHOX2O60902 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SHOX2O60902 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.9■□□□□ 0.78
SHOX2O60902 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SHOX2O60902 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.9■□□□□ 0.78
SHOX2O60902 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 AC009237.3-201ENST00000393279 1427 ntBASIC19.9■□□□□ 0.78
SHOX2O60902 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SHOX2O60902 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.9■□□□□ 0.78
SHOX2O60902 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.9■□□□□ 0.78
SHOX2O60902 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHOX2O60902 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
SHOX2O60902 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHOX2O60902 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.89■□□□□ 0.77
SHOX2O60902 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.89■□□□□ 0.77
SHOX2O60902 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.89■□□□□ 0.77
SHOX2O60902 MKRN4P-201ENST00000444706 1521 ntBASIC19.89■□□□□ 0.77
SHOX2O60902 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
SHOX2O60902 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.89■□□□□ 0.77
SHOX2O60902 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SHOX2O60902 PRORSD1P-202ENST00000563365 2154 ntBASIC19.89■□□□□ 0.77
SHOX2O60902 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.89■□□□□ 0.77
SHOX2O60902 AC093525.10-201ENST00000625130 1569 ntBASIC19.89■□□□□ 0.77
SHOX2O60902 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.89■□□□□ 0.77
SHOX2O60902 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHOX2O60902 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms