Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 AC026366.1-201ENST00000488803 879 ntBASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 HES2-206ENST00000489730 730 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 AC008687.6-201ENST00000596318 630 ntBASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV41A0A0B4J266 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 ESRRAP1-201ENST00000400596 1257 ntBASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 FAM201B-201ENST00000458407 597 ntBASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 AC120498.8-201ENST00000614275 531 ntBASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRAV41A0A0B4J266 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 RPS2P52-201ENST00000469610 820 ntBASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 MIR4651-201ENST00000582622 73 ntBASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRAV41A0A0B4J266 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
TRAV41A0A0B4J266 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.64■□□□□ 0.1
TRAV41A0A0B4J266 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TRAV41A0A0B4J266 KRT17P3-201ENST00000420566 1262 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms