Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 RPS2P55-201ENST00000397318 883 ntBASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 AC107956.1-201ENST00000494359 873 ntBASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA3Q9Y5H0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
PCDHGA3Q9Y5H0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA3Q9Y5H0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA3Q9Y5H0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA3Q9Y5H0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PCDHGA3Q9Y5H0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 AP001412.1-201ENST00000608405 714 ntBASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 AL135905.2-201ENST00000584934 1404 ntBASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCDHGA3Q9Y5H0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 AL390719.1-204ENST00000412397 1219 ntBASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 AC239809.2-201ENST00000415381 517 ntBASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 AL023875.1-201ENST00000640777 796 ntBASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHGA3Q9Y5H0 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 AC110285.5-201ENST00000611501 352 ntBASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHGA3Q9Y5H0 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 KRT17P2-201ENST00000300992 1314 ntBASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms