Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 AC126177.7-201ENST00000547904 679 ntBASIC12.51□□□□□ -0.41
LINC00643Q86TS7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 AC084018.2-201ENST00000613093 2607 ntBASIC12.51□□□□□ -0.41
LINC00643Q86TS7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC12.5□□□□□ -0.41
LINC00643Q86TS7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
LINC00643Q86TS7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 TMEM179-206ENST00000616017 1645 ntBASIC12.49□□□□□ -0.41
LINC00643Q86TS7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00643Q86TS7 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC12.48□□□□□ -0.41
LINC00643Q86TS7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms