Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL355472.2-201ENST00000422958 438 ntBASIC19.3■□□□□ 0.68
FOXA1P55317 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.3■□□□□ 0.68
FOXA1P55317 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
FOXA1P55317 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
FOXA1P55317 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.29■□□□□ 0.68
FOXA1P55317 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 AC009237.14-201ENST00000609975 1594 ntBASIC19.29■□□□□ 0.68
FOXA1P55317 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
FOXA1P55317 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 KRT18P68-201ENST00000392293 1000 ntBASIC19.29■□□□□ 0.68
FOXA1P55317 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 CYP2T1P-201ENST00000432607 1285 ntBASIC19.29■□□□□ 0.68
FOXA1P55317 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.29■□□□□ 0.68
FOXA1P55317 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.29■□□□□ 0.68
FOXA1P55317 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.29■□□□□ 0.68
FOXA1P55317 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXA1P55317 AC018445.3-201ENST00000624177 1945 ntBASIC19.29■□□□□ 0.68
FOXA1P55317 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXA1P55317 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
FOXA1P55317 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
FOXA1P55317 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
FOXA1P55317 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXA1P55317 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
FOXA1P55317 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXA1P55317 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.28■□□□□ 0.68
FOXA1P55317 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 AL031963.3-201ENST00000606441 850 ntBASIC19.28■□□□□ 0.68
FOXA1P55317 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
FOXA1P55317 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXA1P55317 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
FOXA1P55317 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
FOXA1P55317 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
FOXA1P55317 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
FOXA1P55317 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.27■□□□□ 0.68
FOXA1P55317 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXA1P55317 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.27■□□□□ 0.68
FOXA1P55317 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.27■□□□□ 0.68
FOXA1P55317 CYP2T3P-201ENST00000601990 817 ntBASIC19.27■□□□□ 0.68
FOXA1P55317 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.27■□□□□ 0.68
FOXA1P55317 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.27■□□□□ 0.68
FOXA1P55317 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXA1P55317 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
FOXA1P55317 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
FOXA1P55317 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
FOXA1P55317 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
FOXA1P55317 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
FOXA1P55317 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
FOXA1P55317 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA1P55317 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.26■□□□□ 0.67
FOXA1P55317 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.26■□□□□ 0.67
FOXA1P55317 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA1P55317 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.26■□□□□ 0.67
FOXA1P55317 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.26■□□□□ 0.67
FOXA1P55317 AP000974.1-201ENST00000623909 2387 ntBASIC19.26■□□□□ 0.67
FOXA1P55317 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA1P55317 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.26■□□□□ 0.67
FOXA1P55317 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.26■□□□□ 0.67
FOXA1P55317 RARRES2P6-201ENST00000567333 442 ntBASIC19.26■□□□□ 0.67
FOXA1P55317 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
FOXA1P55317 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.26■□□□□ 0.67
FOXA1P55317 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
FOXA1P55317 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms