Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 AC138932.1-201ENST00000534164 6830 ntBASIC16.19■□□□□ 0.18
CDX1P47902 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
CDX1P47902 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
CDX1P47902 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CDX1P47902 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.19■□□□□ 0.18
CDX1P47902 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.19■□□□□ 0.18
CDX1P47902 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.19■□□□□ 0.18
CDX1P47902 AC245052.3-201ENST00000450182 901 ntBASIC16.19■□□□□ 0.18
CDX1P47902 AC069236.1-201ENST00000604339 616 ntBASIC16.19■□□□□ 0.18
CDX1P47902 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.19■□□□□ 0.18
CDX1P47902 OR10C1-204ENST00000622521 1039 ntBASIC16.19■□□□□ 0.18
CDX1P47902 AC008694.1-202ENST00000636953 945 ntBASIC16.19■□□□□ 0.18
CDX1P47902 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.19■□□□□ 0.18
CDX1P47902 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDX1P47902 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CDX1P47902 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.18■□□□□ 0.18
CDX1P47902 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CDX1P47902 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 TSPY6P-201ENST00000448518 926 ntBASIC16.18■□□□□ 0.18
CDX1P47902 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC16.18■□□□□ 0.18
CDX1P47902 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.18■□□□□ 0.18
CDX1P47902 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.18■□□□□ 0.18
CDX1P47902 AC116562.4-201ENST00000641316 2276 ntBASIC16.18■□□□□ 0.18
CDX1P47902 AC005332.8-201ENST00000622750 2735 ntBASIC16.18■□□□□ 0.18
CDX1P47902 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CDX1P47902 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CDX1P47902 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CDX1P47902 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.18■□□□□ 0.18
CDX1P47902 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CDX1P47902 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDX1P47902 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.17■□□□□ 0.18
CDX1P47902 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CDX1P47902 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.17■□□□□ 0.18
CDX1P47902 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 SLC29A4P1-201ENST00000398760 971 ntBASIC16.17■□□□□ 0.18
CDX1P47902 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 EMC9-206ENST00000560403 872 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.17■□□□□ 0.18
CDX1P47902 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.17■□□□□ 0.18
CDX1P47902 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CDX1P47902 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDX1P47902 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CDX1P47902 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.17■□□□□ 0.18
CDX1P47902 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CDX1P47902 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CDX1P47902 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.16■□□□□ 0.18
CDX1P47902 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CDX1P47902 AL512625.2-201ENST00000417533 625 ntBASIC16.16■□□□□ 0.18
CDX1P47902 CYP2T1P-201ENST00000432607 1285 ntBASIC16.16■□□□□ 0.18
CDX1P47902 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDX1P47902 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms