Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FSCN1P1-201ENST00000568912 1481 ntBASIC19.25■□□□□ 0.67
COL5A1P20908 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 HLA-G-202ENST00000376815 851 ntBASIC19.25■□□□□ 0.67
COL5A1P20908 HLA-G-203ENST00000376818 1127 ntBASIC19.25■□□□□ 0.67
COL5A1P20908 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A1P20908 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.25■□□□□ 0.67
COL5A1P20908 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A1P20908 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A1P20908 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.25■□□□□ 0.67
COL5A1P20908 AP005242.2-201ENST00000580065 1175 ntBASIC19.25■□□□□ 0.67
COL5A1P20908 NTF6B-201ENST00000591913 560 ntBASIC19.25■□□□□ 0.67
COL5A1P20908 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A1P20908 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL5A1P20908 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.25■□□□□ 0.67
COL5A1P20908 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A1P20908 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 MESTP1-201ENST00000404287 994 ntBASIC19.24■□□□□ 0.67
COL5A1P20908 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.24■□□□□ 0.67
COL5A1P20908 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.24■□□□□ 0.67
COL5A1P20908 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.24■□□□□ 0.67
COL5A1P20908 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.24■□□□□ 0.67
COL5A1P20908 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A1P20908 AL445675.2-201ENST00000620291 557 ntBASIC19.24■□□□□ 0.67
COL5A1P20908 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A1P20908 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.23■□□□□ 0.67
COL5A1P20908 AL137013.1-201ENST00000432946 1228 ntBASIC19.23■□□□□ 0.67
COL5A1P20908 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.23■□□□□ 0.67
COL5A1P20908 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A1P20908 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A1P20908 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A1P20908 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A1P20908 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL5A1P20908 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.23■□□□□ 0.67
COL5A1P20908 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL5A1P20908 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A1P20908 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A1P20908 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.23■□□□□ 0.67
COL5A1P20908 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A1P20908 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
COL5A1P20908 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL5A1P20908 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A1P20908 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL5A1P20908 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A1P20908 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
COL5A1P20908 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A1P20908 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A1P20908 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL5A1P20908 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
COL5A1P20908 AC022616.7-201ENST00000525383 220 ntBASIC19.22■□□□□ 0.67
COL5A1P20908 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A1P20908 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A1P20908 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.22■□□□□ 0.67
COL5A1P20908 AL049796.1-201ENST00000565336 1766 ntBASIC19.22■□□□□ 0.67
COL5A1P20908 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL5A1P20908 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL5A1P20908 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.21■□□□□ 0.67
COL5A1P20908 AC006011.2-201ENST00000621313 1158 ntBASIC19.21■□□□□ 0.67
COL5A1P20908 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.21■□□□□ 0.67
COL5A1P20908 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.21■□□□□ 0.67
COL5A1P20908 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A1P20908 B3GAT3P1-201ENST00000471720 806 ntBASIC19.21■□□□□ 0.67
COL5A1P20908 WWOX-216ENST00000569818 525 ntBASIC19.21■□□□□ 0.67
COL5A1P20908 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
COL5A1P20908 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
COL5A1P20908 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL5A1P20908 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL5A1P20908 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL5A1P20908 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms