Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC8.21□□□□□ -1.12e-6■■■□□ 15.8
YBX3P16989 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.32e-6■■■□□ 15.8
YBX3P16989 BRCA1-208ENST00000468300 3273 ntTSL 1 (best) BASIC9.65□□□□□ -0.875e-6■■■□□ 15.8
YBX3P16989 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC7.63□□□□□ -1.195e-6■■■□□ 15.8
YBX3P16989 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.485e-6■■■□□ 15.8
YBX3P16989 HYOU1-209ENST00000531694 2357 ntTSL 211.32□□□□□ -0.62e-8■■■□□ 15.8
YBX3P16989 MRPS5-207ENST00000482568 711 ntTSL 316.96■□□□□ 0.312e-8■■■□□ 15.8
YBX3P16989 MRPS5-203ENST00000461916 793 ntTSL 212.77□□□□□ -0.372e-8■■■□□ 15.8
YBX3P16989 MRPS5-208ENST00000482821 3680 ntTSL 210.29□□□□□ -0.762e-8■■■□□ 15.8
YBX3P16989 HIST1H4D-201ENST00000614247 312 ntAPPRIS P1 BASIC10.89□□□□□ -0.673e-16■■■□□ 15.8
YBX3P16989 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19.42■□□□□ 0.73e-8■■■□□ 15.8
YBX3P16989 SMS-202ENST00000404933 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.313e-8■■■□□ 15.8
YBX3P16989 CBL-203ENST00000634586 3457 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.154e-7■■■□□ 15.8
YBX3P16989 CBL-205ENST00000637974 3030 ntAPPRIS ALT2 TSL 513.53□□□□□ -0.244e-7■■■□□ 15.8
YBX3P16989 CBL-201ENST00000264033 11231 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.424e-7■■■□□ 15.8
YBX3P16989 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.164e-12■■■□□ 15.8
YBX3P16989 ATP2A2-207ENST00000548169 2951 ntTSL 28.91□□□□□ -0.984e-12■■■□□ 15.8
YBX3P16989 PACS1-205ENST00000527224 3024 ntTSL 218.71■□□□□ 0.595e-6■■■□□ 15.7
YBX3P16989 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.235e-6■■■□□ 15.7
YBX3P16989 PACS1-206ENST00000527380 548 ntTSL 48.06□□□□□ -1.125e-6■■■□□ 15.7
YBX3P16989 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.05□□□□□ -0.162e-6■■■□□ 15.7
YBX3P16989 NUP98-205ENST00000397007 3698 ntTSL 1 (best) BASIC13.38□□□□□ -0.272e-6■■■□□ 15.7
YBX3P16989 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC26.07■■□□□ 1.764e-7■■■□□ 15.7
YBX3P16989 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.654e-7■■■□□ 15.7
YBX3P16989 BABAM1-218ENST00000602066 799 ntAPPRIS ALT2 TSL 1 (best)25.3■■□□□ 1.644e-7■■■□□ 15.7
YBX3P16989 BABAM1-216ENST00000601436 648 ntAPPRIS ALT2 TSL 325.09■■□□□ 1.614e-7■■■□□ 15.7
YBX3P16989 BABAM1-207ENST00000596335 725 ntAPPRIS ALT2 TSL 325.09■■□□□ 1.614e-7■■■□□ 15.7
YBX3P16989 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.484e-7■■■□□ 15.7
YBX3P16989 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.484e-7■■■□□ 15.7
YBX3P16989 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.44e-7■■■□□ 15.7
YBX3P16989 BABAM1-205ENST00000595393 1471 ntTSL 222.39■■□□□ 1.174e-7■■■□□ 15.7
YBX3P16989 BABAM1-214ENST00000601171 513 ntTSL 521.88■■□□□ 1.094e-7■■■□□ 15.7
YBX3P16989 BABAM1-210ENST00000598567 534 ntAPPRIS ALT2 TSL 321.08■□□□□ 0.974e-7■■■□□ 15.7
YBX3P16989 BABAM1-203ENST00000448635 589 ntTSL 318.04■□□□□ 0.484e-7■■■□□ 15.7
YBX3P16989 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.424e-7■■■□□ 15.7
YBX3P16989 BABAM1-211ENST00000599057 634 ntAPPRIS ALT2 TSL 516.56■□□□□ 0.244e-7■■■□□ 15.7
YBX3P16989 BABAM1-204ENST00000594247 1004 ntTSL 516.56■□□□□ 0.244e-7■■■□□ 15.7
YBX3P16989 BABAM1-217ENST00000601938 782 ntAPPRIS ALT2 TSL 515.16■□□□□ 0.024e-7■■■□□ 15.7
YBX3P16989 BABAM1-212ENST00000599474 731 ntAPPRIS ALT2 TSL 213.94□□□□□ -0.184e-7■■■□□ 15.7
YBX3P16989 MBTPS1-214ENST00000569907 587 ntTSL 422.67■■□□□ 1.221e-9■■■□□ 15.7
YBX3P16989 GTPBP2-203ENST00000419497 1394 ntTSL 220.71■□□□□ 0.912e-12■■■□□ 15.7
YBX3P16989 GTPBP2-204ENST00000432918 1850 ntTSL 315.87■□□□□ 0.132e-12■■■□□ 15.7
YBX3P16989 GTPBP2-210ENST00000496137 516 ntTSL 38.74□□□□□ -1.012e-12■■■□□ 15.7
YBX3P16989 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC9.05□□□□□ -0.966e-7■■■□□ 15.7
YBX3P16989 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.976e-7■■■□□ 15.7
YBX3P16989 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.086e-7■■■□□ 15.7
YBX3P16989 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC8.09□□□□□ -1.116e-7■■■□□ 15.7
YBX3P16989 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.71■■□□□ 1.235e-17■■■□□ 15.7
YBX3P16989 NBAS-205ENST00000429842 638 ntTSL 36.93□□□□□ -1.31e-8■■■□□ 15.7
YBX3P16989 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.61■□□□□ 0.091e-6■■■□□ 15.7
YBX3P16989 DIS3-205ENST00000545453 3651 ntTSL 1 (best) BASIC12.11□□□□□ -0.471e-6■■■□□ 15.7
YBX3P16989 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.161e-6■■■□□ 15.7
YBX3P16989 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.69■□□□□ 0.93e-6■■■□□ 15.7
YBX3P16989 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.663e-6■■■□□ 15.7
YBX3P16989 GALNT10-208ENST00000520647 4359 ntTSL 218.59■□□□□ 0.573e-6■■■□□ 15.7
YBX3P16989 TRAPPC11-204ENST00000505676 2244 ntTSL 1 (best)18.72■□□□□ 0.594e-6■■■□□ 15.7
YBX3P16989 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.394e-6■■■□□ 15.7
YBX3P16989 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.9■□□□□ 0.144e-6■■■□□ 15.7
YBX3P16989 TMEM106B-206ENST00000453686 562 ntTSL 426.61■■□□□ 1.859e-7■■■□□ 15.7
YBX3P16989 ADSL-216ENST00000625194 1079 ntTSL 59.85□□□□□ -0.831e-6■■■□□ 15.7
YBX3P16989 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.411e-7■■■□□ 15.7
YBX3P16989 SMIM15-201ENST00000339020 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.451e-7■■■□□ 15.7
YBX3P16989 RPL12-204ENST00000497825 864 ntTSL 223.91■■□□□ 1.422e-24■■■□□ 15.7
YBX3P16989 RPL12-203ENST00000497322 2275 ntTSL 216.64■□□□□ 0.252e-24■■■□□ 15.7
YBX3P16989 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.532e-24■■■□□ 15.7
YBX3P16989 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.113e-6■■■□□ 15.7
YBX3P16989 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.32□□□□□ -0.123e-6■■■□□ 15.7
YBX3P16989 WDR18-210ENST00000591997 577 ntTSL 327.51■■□□□ 1.992e-6■■■□□ 15.7
YBX3P16989 WDR18-209ENST00000591985 1498 ntTSL 523.95■■□□□ 1.422e-6■■■□□ 15.7
YBX3P16989 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.292e-6■■■□□ 15.7
YBX3P16989 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC22.76■■□□□ 1.232e-6■■■□□ 15.7
YBX3P16989 WDR18-211ENST00000607440 1397 ntTSL 522.5■■□□□ 1.192e-6■■■□□ 15.7
YBX3P16989 WDR18-201ENST00000251289 1501 ntTSL 521.57■■□□□ 1.042e-6■■■□□ 15.7
YBX3P16989 SEC14L1-203ENST00000431431 2504 ntTSL 2 BASIC14.26□□□□□ -0.133e-6■■■□□ 15.7
YBX3P16989 SEC14L1-227ENST00000591437 2828 ntTSL 5 BASIC13.32□□□□□ -0.283e-6■■■□□ 15.7
YBX3P16989 ZHX1-205ENST00000522595 1114 ntTSL 226.57■■□□□ 1.842e-6■■■□□ 15.7
YBX3P16989 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.189e-11■■■□□ 15.7
YBX3P16989 ETFB-202ENST00000354232 3551 ntTSL 1 (best) BASIC11.12□□□□□ -0.637e-10■■■□□ 15.7
YBX3P16989 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC9.24□□□□□ -0.933e-7■■■□□ 15.7
YBX3P16989 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.862e-6■■■□□ 15.7
YBX3P16989 BIRC5-208ENST00000590925 648 ntTSL 1 (best)24.49■■□□□ 1.516e-9■■■□□ 15.7
YBX3P16989 KLK1-203ENST00000593859 992 ntTSL 222.46■■□□□ 1.196e-9■■■□□ 15.7
YBX3P16989 BIRC5-206ENST00000589892 747 ntTSL 222.27■■□□□ 1.166e-9■■■□□ 15.7
YBX3P16989 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.816e-9■■■□□ 15.7
YBX3P16989 KLK1-204ENST00000596300 912 ntTSL 218.51■□□□□ 0.556e-9■■■□□ 15.7
YBX3P16989 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.7■□□□□ 0.426e-9■■■□□ 15.7
YBX3P16989 KLK1-202ENST00000593325 1854 ntTSL 214.61□□□□□ -0.076e-9■■■□□ 15.7
YBX3P16989 IGF2BP2-203ENST00000421047 1711 ntTSL 1 (best) BASIC15.71■□□□□ 0.116e-7■■■□□ 15.7
YBX3P16989 CUX1-202ENST00000292538 2930 ntTSL 1 (best) BASIC12.48□□□□□ -0.413e-6■■■□□ 15.7
YBX3P16989 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC12.07□□□□□ -0.483e-6■■■□□ 15.7
YBX3P16989 CUX1-205ENST00000425244 2776 ntTSL 2 BASIC11.98□□□□□ -0.493e-6■■■□□ 15.7
YBX3P16989 CUX1-218ENST00000560541 3176 ntTSL 511.43□□□□□ -0.583e-6■■■□□ 15.7
YBX3P16989 CUX1-217ENST00000558836 2965 ntTSL 511.4□□□□□ -0.583e-6■■■□□ 15.7
YBX3P16989 CUX1-221ENST00000622516 2990 ntTSL 1 (best) BASIC11.4□□□□□ -0.583e-6■■■□□ 15.7
YBX3P16989 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC10.69□□□□□ -0.73e-6■■■□□ 15.7
YBX3P16989 NADK-206ENST00000464373 722 ntTSL 236.55■■■■□ 3.445e-9■■■□□ 15.7
YBX3P16989 NADK-205ENST00000460602 974 ntTSL 233.97■■■■□ 3.035e-9■■■□□ 15.7
YBX3P16989 NADK-212ENST00000492768 859 ntTSL 332.45■■■□□ 2.795e-9■■■□□ 15.7
YBX3P16989 NADK-213ENST00000492845 937 ntTSL 225.37■■□□□ 1.655e-9■■■□□ 15.7
YBX3P16989 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.585e-9■■■□□ 15.7
Retrieved 100 of 29,075 protein–RNA pairs in 542.9 ms