Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
TNFP01375 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.52■□□□□ 0.72
TNFP01375 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
TNFP01375 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TNFP01375 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.52■□□□□ 0.72
TNFP01375 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.52■□□□□ 0.72
TNFP01375 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.52■□□□□ 0.72
TNFP01375 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.52■□□□□ 0.72
TNFP01375 AC113410.3-201ENST00000623366 203 ntBASIC19.52■□□□□ 0.72
TNFP01375 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TNFP01375 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TNFP01375 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TNFP01375 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
TNFP01375 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.51■□□□□ 0.71
TNFP01375 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.51■□□□□ 0.71
TNFP01375 AL353807.1-201ENST00000427475 662 ntBASIC19.51■□□□□ 0.71
TNFP01375 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.51■□□□□ 0.71
TNFP01375 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.51■□□□□ 0.71
TNFP01375 MIR4785-201ENST00000585005 73 ntBASIC19.51■□□□□ 0.71
TNFP01375 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.51■□□□□ 0.71
TNFP01375 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.51■□□□□ 0.71
TNFP01375 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TNFP01375 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.51■□□□□ 0.71
TNFP01375 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TNFP01375 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.51■□□□□ 0.71
TNFP01375 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.5■□□□□ 0.71
TNFP01375 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.5■□□□□ 0.71
TNFP01375 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.5■□□□□ 0.71
TNFP01375 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.5■□□□□ 0.71
TNFP01375 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
TNFP01375 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.5■□□□□ 0.71
TNFP01375 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
TNFP01375 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TNFP01375 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.5■□□□□ 0.71
TNFP01375 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.49■□□□□ 0.71
TNFP01375 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TNFP01375 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.49■□□□□ 0.71
TNFP01375 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
TNFP01375 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 AF186192.3-201ENST00000583427 947 ntBASIC19.49■□□□□ 0.71
TNFP01375 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TNFP01375 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.48■□□□□ 0.71
TNFP01375 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.48■□□□□ 0.71
TNFP01375 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
TNFP01375 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.48■□□□□ 0.71
TNFP01375 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.48■□□□□ 0.71
TNFP01375 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.48■□□□□ 0.71
TNFP01375 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.48■□□□□ 0.71
TNFP01375 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.48■□□□□ 0.71
TNFP01375 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.48■□□□□ 0.71
TNFP01375 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.48■□□□□ 0.71
TNFP01375 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TNFP01375 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.48■□□□□ 0.71
TNFP01375 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms