Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 AC133561.4-201ENST00000566112 224 ntBASIC14.56□□□□□ -0.08
SMKR1H3BMG3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 BX119927.1-201ENST00000636596 1552 ntBASIC14.56□□□□□ -0.08
SMKR1H3BMG3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SMKR1H3BMG3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 DUX4L19-201ENST00000557448 1267 ntBASIC14.55□□□□□ -0.08
SMKR1H3BMG3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC14.55□□□□□ -0.08
SMKR1H3BMG3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SMKR1H3BMG3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 EEF1DP3-203ENST00000566025 782 ntBASIC14.54□□□□□ -0.08
SMKR1H3BMG3 AC053503.5-201ENST00000601508 636 ntBASIC14.54□□□□□ -0.08
SMKR1H3BMG3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SMKR1H3BMG3 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 RARRES2P11-201ENST00000635158 484 ntBASIC14.53□□□□□ -0.08
SMKR1H3BMG3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms