Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
TRIM49D1C9J1S8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM49D1C9J1S8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM49D1C9J1S8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM49D1C9J1S8 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM49D1C9J1S8 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM49D1C9J1S8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 MYCNOS-205ENST00000641950 531 ntBASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 AC004408.2-201ENST00000623613 2777 ntBASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM49D1C9J1S8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 AC009237.14-201ENST00000609975 1594 ntBASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 PTBP1P-201ENST00000554374 1601 ntBASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRIM49D1C9J1S8 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49D1C9J1S8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms