Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.48■■□□□ 1.03
LRRC53A6NM62 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.48■■□□□ 1.03
LRRC53A6NM62 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 KRT18P68-201ENST00000392293 1000 ntBASIC21.48■■□□□ 1.03
LRRC53A6NM62 CYP2T1P-201ENST00000432607 1285 ntBASIC21.48■■□□□ 1.03
LRRC53A6NM62 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
LRRC53A6NM62 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.48■■□□□ 1.03
LRRC53A6NM62 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
LRRC53A6NM62 AL031963.3-201ENST00000606441 850 ntBASIC21.48■■□□□ 1.03
LRRC53A6NM62 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.48■■□□□ 1.03
LRRC53A6NM62 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LRRC53A6NM62 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LRRC53A6NM62 AC018445.3-201ENST00000624177 1945 ntBASIC21.47■■□□□ 1.03
LRRC53A6NM62 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.47■■□□□ 1.03
LRRC53A6NM62 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRC53A6NM62 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRC53A6NM62 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRC53A6NM62 AC026271.2-201ENST00000428091 497 ntBASIC21.46■■□□□ 1.03
LRRC53A6NM62 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 CYP2T3P-201ENST00000601990 817 ntBASIC21.46■■□□□ 1.03
LRRC53A6NM62 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 AC098818.2-201ENST00000564925 2320 ntBASIC21.46■■□□□ 1.03
LRRC53A6NM62 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LRRC53A6NM62 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
LRRC53A6NM62 KRT8P20-201ENST00000423953 1409 ntBASIC21.46■■□□□ 1.03
LRRC53A6NM62 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
LRRC53A6NM62 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.45■■□□□ 1.03
LRRC53A6NM62 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.03
LRRC53A6NM62 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 AL355472.2-201ENST00000422958 438 ntBASIC21.45■■□□□ 1.02
LRRC53A6NM62 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
LRRC53A6NM62 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRC53A6NM62 KRT16P6-202ENST00000425692 1426 ntBASIC21.45■■□□□ 1.02
LRRC53A6NM62 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 RNF165-205ENST00000588679 2904 ntBASIC21.44■■□□□ 1.02
LRRC53A6NM62 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.44■■□□□ 1.02
LRRC53A6NM62 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRC53A6NM62 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRC53A6NM62 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms