Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV1-1A0A0B4J248 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.58■□□□□ 0.09
TRAV1-1A0A0B4J248 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
TRAV1-1A0A0B4J248 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.58■□□□□ 0.09
TRAV1-1A0A0B4J248 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.58■□□□□ 0.09
TRAV1-1A0A0B4J248 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRAV1-1A0A0B4J248 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 NOC2LP1-202ENST00000452600 2235 ntBASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 SLC47A1P1-202ENST00000449666 945 ntBASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 RNF146-205ENST00000477776 762 ntTSL 3 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 AL138724.1-201ENST00000606771 1088 ntBASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 BICD1-207ENST00000551848 1962 ntBASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV1-1A0A0B4J248 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 AC005224.4-201ENST00000583262 1652 ntBASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 AC116050.2-201ENST00000612102 1779 ntBASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 AL354751.1-201ENST00000412768 1863 ntBASIC15.57■□□□□ 0.08
TRAV1-1A0A0B4J248 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 AL133373.2-201ENST00000623187 2828 ntBASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
TRAV1-1A0A0B4J248 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 HSD17B1P1-201ENST00000590052 955 ntBASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms