Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHGA1Q9Y5H4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PCDHGA1Q9Y5H4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA1Q9Y5H4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA1Q9Y5H4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA1Q9Y5H4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.27■■□□□ 1.64
PCDHGA1Q9Y5H4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHGA1Q9Y5H4 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC25.26■■□□□ 1.63
PCDHGA1Q9Y5H4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA1Q9Y5H4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
PCDHGA1Q9Y5H4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA1Q9Y5H4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA1Q9Y5H4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA1Q9Y5H4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.25■■□□□ 1.63
PCDHGA1Q9Y5H4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA1Q9Y5H4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA1Q9Y5H4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA1Q9Y5H4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHGA1Q9Y5H4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHGA1Q9Y5H4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
PCDHGA1Q9Y5H4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHGA1Q9Y5H4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHGA1Q9Y5H4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA1Q9Y5H4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
PCDHGA1Q9Y5H4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHGA1Q9Y5H4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.21■■□□□ 1.63
PCDHGA1Q9Y5H4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA1Q9Y5H4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHGA1Q9Y5H4 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHGA1Q9Y5H4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHGA1Q9Y5H4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHGA1Q9Y5H4 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHGA1Q9Y5H4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHGA1Q9Y5H4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHGA1Q9Y5H4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.17■■□□□ 1.62
PCDHGA1Q9Y5H4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 AC008813.1-201ENST00000536597 885 ntBASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 NTF6A-201ENST00000591175 560 ntBASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA1Q9Y5H4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.15■■□□□ 1.62
PCDHGA1Q9Y5H4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.15■■□□□ 1.62
PCDHGA1Q9Y5H4 AC022413.1-201ENST00000624602 984 ntBASIC25.15■■□□□ 1.62
PCDHGA1Q9Y5H4 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA1Q9Y5H4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.14■■□□□ 1.61
PCDHGA1Q9Y5H4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
PCDHGA1Q9Y5H4 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.13■■□□□ 1.61
PCDHGA1Q9Y5H4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
PCDHGA1Q9Y5H4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.13■■□□□ 1.61
PCDHGA1Q9Y5H4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA1Q9Y5H4 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 AC012354.3-201ENST00000623734 483 ntBASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
PCDHGA1Q9Y5H4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDHGA1Q9Y5H4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
PCDHGA1Q9Y5H4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHGA1Q9Y5H4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA1Q9Y5H4 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA1Q9Y5H4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC25.1■■□□□ 1.61
PCDHGA1Q9Y5H4 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.1■■□□□ 1.61
PCDHGA1Q9Y5H4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA1Q9Y5H4 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHGA1Q9Y5H4 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHGA1Q9Y5H4 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PCDHGA1Q9Y5H4 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA1Q9Y5H4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA1Q9Y5H4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.06■■□□□ 1.6
PCDHGA1Q9Y5H4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHGA1Q9Y5H4 AC010864.1-201ENST00000609407 1511 ntBASIC25.06■■□□□ 1.6
PCDHGA1Q9Y5H4 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHGA1Q9Y5H4 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHGA1Q9Y5H4 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.03■■□□□ 1.6
PCDHGA1Q9Y5H4 AL161658.1-201ENST00000623641 1967 ntBASIC25.03■■□□□ 1.6
PCDHGA1Q9Y5H4 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.03■■□□□ 1.6
PCDHGA1Q9Y5H4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHGA1Q9Y5H4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHGA1Q9Y5H4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHGA1Q9Y5H4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHGA1Q9Y5H4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.01■■□□□ 1.59
PCDHGA1Q9Y5H4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHGA1Q9Y5H4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHGA1Q9Y5H4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
PCDHGA1Q9Y5H4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHGA1Q9Y5H4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25■■□□□ 1.59
PCDHGA1Q9Y5H4 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.99■■□□□ 1.59
PCDHGA1Q9Y5H4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHGA1Q9Y5H4 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHGA1Q9Y5H4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHGA1Q9Y5H4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms