Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
NOTCH3Q9UM47 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NOTCH3Q9UM47 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NOTCH3Q9UM47 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NOTCH3Q9UM47 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NOTCH3Q9UM47 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.91■□□□□ 0.78
NOTCH3Q9UM47 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NOTCH3Q9UM47 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
NOTCH3Q9UM47 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NOTCH3Q9UM47 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NOTCH3Q9UM47 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NOTCH3Q9UM47 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NOTCH3Q9UM47 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NOTCH3Q9UM47 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NOTCH3Q9UM47 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NOTCH3Q9UM47 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.87■□□□□ 0.77
NOTCH3Q9UM47 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NOTCH3Q9UM47 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.86■□□□□ 0.77
NOTCH3Q9UM47 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NOTCH3Q9UM47 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NOTCH3Q9UM47 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.86■□□□□ 0.77
NOTCH3Q9UM47 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
NOTCH3Q9UM47 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NOTCH3Q9UM47 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NOTCH3Q9UM47 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.85■□□□□ 0.77
NOTCH3Q9UM47 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
NOTCH3Q9UM47 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NOTCH3Q9UM47 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
NOTCH3Q9UM47 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.84■□□□□ 0.77
NOTCH3Q9UM47 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NOTCH3Q9UM47 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.84■□□□□ 0.77
NOTCH3Q9UM47 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC19.84■□□□□ 0.77
NOTCH3Q9UM47 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 GPX1-201ENST00000419349 1106 ntBASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
NOTCH3Q9UM47 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NOTCH3Q9UM47 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC19.81■□□□□ 0.76
NOTCH3Q9UM47 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
NOTCH3Q9UM47 AC120057.4-201ENST00000624722 1615 ntBASIC19.81■□□□□ 0.76
NOTCH3Q9UM47 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NOTCH3Q9UM47 LINC00273-201ENST00000539813 1452 ntBASIC19.79■□□□□ 0.76
NOTCH3Q9UM47 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NOTCH3Q9UM47 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.78■□□□□ 0.76
NOTCH3Q9UM47 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.78■□□□□ 0.76
NOTCH3Q9UM47 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NOTCH3Q9UM47 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NOTCH3Q9UM47 AL161658.1-201ENST00000623641 1967 ntBASIC19.77■□□□□ 0.75
NOTCH3Q9UM47 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NOTCH3Q9UM47 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.76■□□□□ 0.75
NOTCH3Q9UM47 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NOTCH3Q9UM47 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.75■□□□□ 0.75
NOTCH3Q9UM47 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NOTCH3Q9UM47 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NOTCH3Q9UM47 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.75■□□□□ 0.75
NOTCH3Q9UM47 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NOTCH3Q9UM47 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.74■□□□□ 0.75
NOTCH3Q9UM47 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NOTCH3Q9UM47 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NOTCH3Q9UM47 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NOTCH3Q9UM47 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NOTCH3Q9UM47 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NOTCH3Q9UM47 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
NOTCH3Q9UM47 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NOTCH3Q9UM47 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 NTF6A-201ENST00000591175 560 ntBASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NOTCH3Q9UM47 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NOTCH3Q9UM47 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
NOTCH3Q9UM47 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NOTCH3Q9UM47 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NOTCH3Q9UM47 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NOTCH3Q9UM47 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms