Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL12A1Q99715 KRT18P60-201ENST00000312876 1297 ntBASIC23.38■■□□□ 1.33
COL12A1Q99715 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL12A1Q99715 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL12A1Q99715 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL12A1Q99715 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL12A1Q99715 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC23.36■■□□□ 1.33
COL12A1Q99715 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.36■■□□□ 1.33
COL12A1Q99715 AL451085.2-201ENST00000605085 799 ntBASIC23.36■■□□□ 1.33
COL12A1Q99715 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL12A1Q99715 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
COL12A1Q99715 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.35■■□□□ 1.33
COL12A1Q99715 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
COL12A1Q99715 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL12A1Q99715 AC004987.1-201ENST00000428627 508 ntBASIC23.34■■□□□ 1.33
COL12A1Q99715 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL12A1Q99715 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.34■■□□□ 1.33
COL12A1Q99715 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL12A1Q99715 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL12A1Q99715 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.33■■□□□ 1.32
COL12A1Q99715 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC23.33■■□□□ 1.32
COL12A1Q99715 ATP5G2P3-201ENST00000429083 425 ntBASIC23.31■■□□□ 1.32
COL12A1Q99715 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL12A1Q99715 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.31■■□□□ 1.32
COL12A1Q99715 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL12A1Q99715 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
COL12A1Q99715 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.29■■□□□ 1.32
COL12A1Q99715 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL12A1Q99715 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL12A1Q99715 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL12A1Q99715 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.28■■□□□ 1.32
COL12A1Q99715 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL12A1Q99715 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.27■■□□□ 1.31
COL12A1Q99715 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
COL12A1Q99715 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC23.26■■□□□ 1.31
COL12A1Q99715 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.25■■□□□ 1.31
COL12A1Q99715 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.25■■□□□ 1.31
COL12A1Q99715 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL12A1Q99715 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL12A1Q99715 AC131212.1-201ENST00000613771 668 ntBASIC23.24■■□□□ 1.31
COL12A1Q99715 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.24■■□□□ 1.31
COL12A1Q99715 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.24■■□□□ 1.31
COL12A1Q99715 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.24■■□□□ 1.31
COL12A1Q99715 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
COL12A1Q99715 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL12A1Q99715 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL12A1Q99715 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL12A1Q99715 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
COL12A1Q99715 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL12A1Q99715 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL12A1Q99715 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
COL12A1Q99715 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.2■■□□□ 1.3
COL12A1Q99715 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL12A1Q99715 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.19■■□□□ 1.3
COL12A1Q99715 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL12A1Q99715 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL12A1Q99715 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.18■■□□□ 1.3
COL12A1Q99715 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.18■■□□□ 1.3
COL12A1Q99715 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL12A1Q99715 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
COL12A1Q99715 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL12A1Q99715 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.17■■□□□ 1.3
COL12A1Q99715 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL12A1Q99715 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
COL12A1Q99715 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL12A1Q99715 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.16■■□□□ 1.3
COL12A1Q99715 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.15■■□□□ 1.3
COL12A1Q99715 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL12A1Q99715 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.15■■□□□ 1.3
COL12A1Q99715 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.15■■□□□ 1.3
COL12A1Q99715 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.15■■□□□ 1.3
COL12A1Q99715 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.15■■□□□ 1.3
COL12A1Q99715 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
COL12A1Q99715 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL12A1Q99715 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL12A1Q99715 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL12A1Q99715 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL12A1Q99715 THA1P-201ENST00000590384 1145 ntBASIC23.12■■□□□ 1.29
COL12A1Q99715 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL12A1Q99715 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL12A1Q99715 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.11■■□□□ 1.29
COL12A1Q99715 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.11■■□□□ 1.29
COL12A1Q99715 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL12A1Q99715 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.1■■□□□ 1.29
COL12A1Q99715 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.1■■□□□ 1.29
COL12A1Q99715 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL12A1Q99715 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
COL12A1Q99715 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL12A1Q99715 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL12A1Q99715 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.08■■□□□ 1.29
COL12A1Q99715 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL12A1Q99715 AC060814.1-201ENST00000554326 538 ntBASIC23.08■■□□□ 1.29
COL12A1Q99715 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL12A1Q99715 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.07■■□□□ 1.28
COL12A1Q99715 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL12A1Q99715 AC092296.2-201ENST00000589470 999 ntBASIC23.07■■□□□ 1.28
COL12A1Q99715 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC23.07■■□□□ 1.28
COL12A1Q99715 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
COL12A1Q99715 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL12A1Q99715 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms