Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL21A1Q96P44 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL21A1Q96P44 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL21A1Q96P44 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL21A1Q96P44 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
COL21A1Q96P44 AL139393.2-201ENST00000608721 2025 ntBASIC24.34■■□□□ 1.49
COL21A1Q96P44 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL21A1Q96P44 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL21A1Q96P44 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
COL21A1Q96P44 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL21A1Q96P44 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL21A1Q96P44 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL21A1Q96P44 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL21A1Q96P44 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL21A1Q96P44 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.33■■□□□ 1.49
COL21A1Q96P44 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL21A1Q96P44 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
COL21A1Q96P44 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
COL21A1Q96P44 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.32■■□□□ 1.48
COL21A1Q96P44 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL21A1Q96P44 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.32■■□□□ 1.48
COL21A1Q96P44 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL21A1Q96P44 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL21A1Q96P44 AC087741.3-201ENST00000624270 1347 ntBASIC24.31■■□□□ 1.48
COL21A1Q96P44 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL21A1Q96P44 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.3■■□□□ 1.48
COL21A1Q96P44 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL21A1Q96P44 RPS2P35-201ENST00000443417 897 ntBASIC24.3■■□□□ 1.48
COL21A1Q96P44 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL21A1Q96P44 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL21A1Q96P44 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL21A1Q96P44 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL21A1Q96P44 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL21A1Q96P44 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL21A1Q96P44 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL21A1Q96P44 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.27■■□□□ 1.48
COL21A1Q96P44 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL21A1Q96P44 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL21A1Q96P44 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL21A1Q96P44 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.27■■□□□ 1.48
COL21A1Q96P44 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL21A1Q96P44 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.26■■□□□ 1.47
COL21A1Q96P44 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.25■■□□□ 1.47
COL21A1Q96P44 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
COL21A1Q96P44 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.25■■□□□ 1.47
COL21A1Q96P44 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
COL21A1Q96P44 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.25■■□□□ 1.47
COL21A1Q96P44 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
COL21A1Q96P44 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
COL21A1Q96P44 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
COL21A1Q96P44 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
COL21A1Q96P44 AC044849.2-201ENST00000606596 710 ntBASIC24.23■■□□□ 1.47
COL21A1Q96P44 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
COL21A1Q96P44 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
COL21A1Q96P44 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
COL21A1Q96P44 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.22■■□□□ 1.47
COL21A1Q96P44 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
COL21A1Q96P44 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
COL21A1Q96P44 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.21■■□□□ 1.47
COL21A1Q96P44 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
COL21A1Q96P44 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
COL21A1Q96P44 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
COL21A1Q96P44 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
COL21A1Q96P44 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.2■■□□□ 1.46
COL21A1Q96P44 AC142086.6-201ENST00000621154 1765 ntBASIC24.2■■□□□ 1.46
COL21A1Q96P44 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
COL21A1Q96P44 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.2■■□□□ 1.46
COL21A1Q96P44 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
COL21A1Q96P44 AC108673.1-201ENST00000510422 1159 ntBASIC24.19■■□□□ 1.46
COL21A1Q96P44 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.19■■□□□ 1.46
COL21A1Q96P44 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
COL21A1Q96P44 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
COL21A1Q96P44 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.18■■□□□ 1.46
COL21A1Q96P44 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
COL21A1Q96P44 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
COL21A1Q96P44 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.17■■□□□ 1.46
COL21A1Q96P44 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
COL21A1Q96P44 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
COL21A1Q96P44 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL21A1Q96P44 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.15■■□□□ 1.46
COL21A1Q96P44 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL21A1Q96P44 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL21A1Q96P44 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.14■■□□□ 1.46
COL21A1Q96P44 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.13■■□□□ 1.45
COL21A1Q96P44 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL21A1Q96P44 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL21A1Q96P44 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
COL21A1Q96P44 DRD5P2-201ENST00000421395 2012 ntBASIC24.13■■□□□ 1.45
COL21A1Q96P44 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL21A1Q96P44 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL21A1Q96P44 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
COL21A1Q96P44 MIR6090-201ENST00000622481 60 ntBASIC24.12■■□□□ 1.45
COL21A1Q96P44 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL21A1Q96P44 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.11■■□□□ 1.45
COL21A1Q96P44 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL21A1Q96P44 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL21A1Q96P44 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.11■■□□□ 1.45
COL21A1Q96P44 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL21A1Q96P44 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.1■■□□□ 1.45
COL21A1Q96P44 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms