Protein–RNA interactions for Protein: Q8NDX5

PHC3, Polyhomeotic-like protein 3, humanhuman

Predictions only

Length 983 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3Q8NDX5 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PHC3Q8NDX5 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PHC3Q8NDX5 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PHC3Q8NDX5 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
PHC3Q8NDX5 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
PHC3Q8NDX5 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PHC3Q8NDX5 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PHC3Q8NDX5 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PHC3Q8NDX5 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PHC3Q8NDX5 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.71■■□□□ 1.71
PHC3Q8NDX5 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PHC3Q8NDX5 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PHC3Q8NDX5 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PHC3Q8NDX5 AC010864.1-201ENST00000609407 1511 ntBASIC25.7■■□□□ 1.7
PHC3Q8NDX5 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.69■■□□□ 1.7
PHC3Q8NDX5 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PHC3Q8NDX5 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.69■■□□□ 1.7
PHC3Q8NDX5 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PHC3Q8NDX5 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PHC3Q8NDX5 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
PHC3Q8NDX5 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PHC3Q8NDX5 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.68■■□□□ 1.7
PHC3Q8NDX5 MIR6090-201ENST00000622481 60 ntBASIC25.68■■□□□ 1.7
PHC3Q8NDX5 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
PHC3Q8NDX5 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
PHC3Q8NDX5 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PHC3Q8NDX5 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
PHC3Q8NDX5 AC108673.1-201ENST00000510422 1159 ntBASIC25.66■■□□□ 1.7
PHC3Q8NDX5 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PHC3Q8NDX5 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
PHC3Q8NDX5 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.65■■□□□ 1.7
PHC3Q8NDX5 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.65■■□□□ 1.7
PHC3Q8NDX5 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
PHC3Q8NDX5 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PHC3Q8NDX5 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
PHC3Q8NDX5 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
PHC3Q8NDX5 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.64■■□□□ 1.7
PHC3Q8NDX5 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PHC3Q8NDX5 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
PHC3Q8NDX5 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PHC3Q8NDX5 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.62■■□□□ 1.69
PHC3Q8NDX5 ST7-AS1-201ENST00000456775 1889 ntBASIC25.62■■□□□ 1.69
PHC3Q8NDX5 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
PHC3Q8NDX5 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
PHC3Q8NDX5 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PHC3Q8NDX5 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
PHC3Q8NDX5 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.6■■□□□ 1.69
PHC3Q8NDX5 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PHC3Q8NDX5 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
PHC3Q8NDX5 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.6■■□□□ 1.69
PHC3Q8NDX5 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
PHC3Q8NDX5 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PHC3Q8NDX5 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.58■■□□□ 1.69
PHC3Q8NDX5 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PHC3Q8NDX5 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.58■■□□□ 1.68
PHC3Q8NDX5 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.56■■□□□ 1.68
PHC3Q8NDX5 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
PHC3Q8NDX5 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.56■■□□□ 1.68
PHC3Q8NDX5 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PHC3Q8NDX5 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PHC3Q8NDX5 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
PHC3Q8NDX5 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PHC3Q8NDX5 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PHC3Q8NDX5 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.54■■□□□ 1.68
PHC3Q8NDX5 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PHC3Q8NDX5 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PHC3Q8NDX5 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
PHC3Q8NDX5 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PHC3Q8NDX5 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PHC3Q8NDX5 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PHC3Q8NDX5 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PHC3Q8NDX5 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PHC3Q8NDX5 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PHC3Q8NDX5 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.5■■□□□ 1.67
PHC3Q8NDX5 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.49■■□□□ 1.67
PHC3Q8NDX5 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.49■■□□□ 1.67
PHC3Q8NDX5 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
PHC3Q8NDX5 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
PHC3Q8NDX5 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.48■■□□□ 1.67
PHC3Q8NDX5 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
PHC3Q8NDX5 DUX4L29-201ENST00000425409 679 ntBASIC25.47■■□□□ 1.67
PHC3Q8NDX5 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PHC3Q8NDX5 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PHC3Q8NDX5 AC021231.2-201ENST00000594613 730 ntBASIC25.46■■□□□ 1.67
PHC3Q8NDX5 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PHC3Q8NDX5 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PHC3Q8NDX5 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PHC3Q8NDX5 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
PHC3Q8NDX5 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
PHC3Q8NDX5 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PHC3Q8NDX5 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
PHC3Q8NDX5 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
PHC3Q8NDX5 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.44■■□□□ 1.66
PHC3Q8NDX5 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms