Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PDLIM4P50479 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PDLIM4P50479 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PDLIM4P50479 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
PDLIM4P50479 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PDLIM4P50479 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.02■■□□□ 1.12
PDLIM4P50479 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.02■■□□□ 1.12
PDLIM4P50479 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.01■■□□□ 1.11
PDLIM4P50479 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
PDLIM4P50479 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22■■□□□ 1.11
PDLIM4P50479 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22■■□□□ 1.11
PDLIM4P50479 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22■■□□□ 1.11
PDLIM4P50479 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PDLIM4P50479 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.99■■□□□ 1.11
PDLIM4P50479 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.98■■□□□ 1.11
PDLIM4P50479 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.98■■□□□ 1.11
PDLIM4P50479 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.98■■□□□ 1.11
PDLIM4P50479 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM4P50479 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.97■■□□□ 1.11
PDLIM4P50479 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.97■■□□□ 1.11
PDLIM4P50479 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM4P50479 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM4P50479 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PDLIM4P50479 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.96■■□□□ 1.11
PDLIM4P50479 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.96■■□□□ 1.11
PDLIM4P50479 AC010864.1-201ENST00000609407 1511 ntBASIC21.96■■□□□ 1.11
PDLIM4P50479 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.95■■□□□ 1.1
PDLIM4P50479 HSD17B1P1-201ENST00000590052 955 ntBASIC21.94■■□□□ 1.1
PDLIM4P50479 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM4P50479 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM4P50479 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM4P50479 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM4P50479 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PDLIM4P50479 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM4P50479 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM4P50479 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.93■■□□□ 1.1
PDLIM4P50479 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM4P50479 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PDLIM4P50479 LINC00273-201ENST00000539813 1452 ntBASIC21.92■■□□□ 1.1
PDLIM4P50479 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM4P50479 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM4P50479 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM4P50479 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM4P50479 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
PDLIM4P50479 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM4P50479 AC139426.1-201ENST00000568218 2529 ntBASIC21.9■■□□□ 1.1
PDLIM4P50479 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.9■■□□□ 1.1
PDLIM4P50479 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.9■■□□□ 1.1
PDLIM4P50479 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM4P50479 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM4P50479 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM4P50479 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.89■■□□□ 1.09
PDLIM4P50479 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PDLIM4P50479 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.88■■□□□ 1.09
PDLIM4P50479 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PDLIM4P50479 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
PDLIM4P50479 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.86■■□□□ 1.09
PDLIM4P50479 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PDLIM4P50479 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.85■■□□□ 1.09
PDLIM4P50479 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.84■■□□□ 1.09
PDLIM4P50479 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PDLIM4P50479 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.84■■□□□ 1.09
PDLIM4P50479 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.84■■□□□ 1.09
PDLIM4P50479 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.84■■□□□ 1.09
PDLIM4P50479 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PDLIM4P50479 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PDLIM4P50479 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PDLIM4P50479 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PDLIM4P50479 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.81■■□□□ 1.08
PDLIM4P50479 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDLIM4P50479 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDLIM4P50479 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDLIM4P50479 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDLIM4P50479 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PDLIM4P50479 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PDLIM4P50479 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDLIM4P50479 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDLIM4P50479 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM4P50479 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms