Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 AC018358.1-201ENST00000631079 1402 ntBASIC30.65■■■□□ 2.5
TM4SF4P48230 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
TM4SF4P48230 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.65■■■□□ 2.5
TM4SF4P48230 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
TM4SF4P48230 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
TM4SF4P48230 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.64■■■□□ 2.5
TM4SF4P48230 AL033527.3-201ENST00000566366 1196 ntBASIC30.63■■■□□ 2.49
TM4SF4P48230 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC30.61■■■□□ 2.49
TM4SF4P48230 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
TM4SF4P48230 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
TM4SF4P48230 AC008813.1-201ENST00000536597 885 ntBASIC30.6■■■□□ 2.49
TM4SF4P48230 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
TM4SF4P48230 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.6■■■□□ 2.49
TM4SF4P48230 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
TM4SF4P48230 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
TM4SF4P48230 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
TM4SF4P48230 LINC00273-201ENST00000539813 1452 ntBASIC30.58■■■□□ 2.49
TM4SF4P48230 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
TM4SF4P48230 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
TM4SF4P48230 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC30.56■■■□□ 2.48
TM4SF4P48230 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
TM4SF4P48230 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.56■■■□□ 2.48
TM4SF4P48230 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.55■■■□□ 2.48
TM4SF4P48230 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
TM4SF4P48230 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
TM4SF4P48230 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.54■■■□□ 2.48
TM4SF4P48230 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.54■■■□□ 2.48
TM4SF4P48230 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
TM4SF4P48230 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
TM4SF4P48230 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.52■■■□□ 2.48
TM4SF4P48230 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TM4SF4P48230 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC30.5■■■□□ 2.47
TM4SF4P48230 U85056.1-201ENST00000616429 682 ntBASIC30.5■■■□□ 2.47
TM4SF4P48230 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
TM4SF4P48230 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
TM4SF4P48230 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.49■■■□□ 2.47
TM4SF4P48230 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.49■■■□□ 2.47
TM4SF4P48230 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC30.49■■■□□ 2.47
TM4SF4P48230 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.47■■■□□ 2.47
TM4SF4P48230 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
TM4SF4P48230 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
TM4SF4P48230 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC30.45■■■□□ 2.47
TM4SF4P48230 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
TM4SF4P48230 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
TM4SF4P48230 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.43■■■□□ 2.46
TM4SF4P48230 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
TM4SF4P48230 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.42■■■□□ 2.46
TM4SF4P48230 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TM4SF4P48230 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.4■■■□□ 2.46
TM4SF4P48230 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.39■■■□□ 2.46
TM4SF4P48230 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.39■■■□□ 2.46
TM4SF4P48230 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
TM4SF4P48230 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
TM4SF4P48230 TSPY13P-201ENST00000338964 914 ntBASIC30.37■■■□□ 2.45
TM4SF4P48230 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
TM4SF4P48230 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
TM4SF4P48230 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
TM4SF4P48230 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.35■■■□□ 2.45
TM4SF4P48230 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
TM4SF4P48230 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.35■■■□□ 2.45
TM4SF4P48230 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
TM4SF4P48230 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.34■■■□□ 2.45
TM4SF4P48230 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.33■■■□□ 2.45
TM4SF4P48230 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
TM4SF4P48230 AC004987.1-201ENST00000428627 508 ntBASIC30.33■■■□□ 2.45
TM4SF4P48230 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
TM4SF4P48230 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
TM4SF4P48230 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TM4SF4P48230 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TM4SF4P48230 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
TM4SF4P48230 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
TM4SF4P48230 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
TM4SF4P48230 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.31■■■□□ 2.44
TM4SF4P48230 RARRES2P1-201ENST00000474487 481 ntBASIC30.31■■■□□ 2.44
TM4SF4P48230 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
TM4SF4P48230 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF4P48230 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF4P48230 ATP5G2P3-201ENST00000429083 425 ntBASIC30.3■■■□□ 2.44
TM4SF4P48230 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TM4SF4P48230 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
TM4SF4P48230 KRT18P60-201ENST00000312876 1297 ntBASIC30.29■■■□□ 2.44
TM4SF4P48230 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.29■■■□□ 2.44
TM4SF4P48230 AC060814.1-201ENST00000554326 538 ntBASIC30.29■■■□□ 2.44
TM4SF4P48230 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.29■■■□□ 2.44
TM4SF4P48230 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.28■■■□□ 2.44
TM4SF4P48230 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
TM4SF4P48230 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.27■■■□□ 2.44
TM4SF4P48230 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TM4SF4P48230 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
TM4SF4P48230 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
TM4SF4P48230 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TM4SF4P48230 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
TM4SF4P48230 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
TM4SF4P48230 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
TM4SF4P48230 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
TM4SF4P48230 GUK1-208ENST00000366728 842 ntTSL 2 BASIC30.24■■■□□ 2.43
TM4SF4P48230 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
TM4SF4P48230 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC30.24■■■□□ 2.43
TM4SF4P48230 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
TM4SF4P48230 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms