Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.47■□□□□ 0.71
HLA-DQA1P01909 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DQA1P01909 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.46■□□□□ 0.71
HLA-DQA1P01909 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DQA1P01909 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DQA1P01909 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DQA1P01909 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DQA1P01909 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HLA-DQA1P01909 AL449106.1-201ENST00000608517 1980 ntBASIC19.44■□□□□ 0.7
HLA-DQA1P01909 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-DQA1P01909 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-DQA1P01909 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DQA1P01909 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HLA-DQA1P01909 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DQA1P01909 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DQA1P01909 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DQA1P01909 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HLA-DQA1P01909 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HLA-DQA1P01909 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.41■□□□□ 0.7
HLA-DQA1P01909 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HLA-DQA1P01909 BX255925.1-201ENST00000566954 1854 ntBASIC19.41■□□□□ 0.7
HLA-DQA1P01909 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-DQA1P01909 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-DQA1P01909 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-DQA1P01909 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HLA-DQA1P01909 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DQA1P01909 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DQA1P01909 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DQA1P01909 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.4■□□□□ 0.7
HLA-DQA1P01909 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.39■□□□□ 0.7
HLA-DQA1P01909 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DQA1P01909 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HLA-DQA1P01909 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.39■□□□□ 0.69
HLA-DQA1P01909 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DQA1P01909 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DQA1P01909 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DQA1P01909 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HLA-DQA1P01909 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DQA1P01909 AC006077.2-201ENST00000623591 457 ntBASIC19.37■□□□□ 0.69
HLA-DQA1P01909 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DQA1P01909 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DQA1P01909 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HLA-DQA1P01909 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HLA-DQA1P01909 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.36■□□□□ 0.69
HLA-DQA1P01909 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HLA-DQA1P01909 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HLA-DQA1P01909 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HLA-DQA1P01909 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HLA-DQA1P01909 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HLA-DQA1P01909 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.34■□□□□ 0.69
HLA-DQA1P01909 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DQA1P01909 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.34■□□□□ 0.69
HLA-DQA1P01909 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DQA1P01909 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DQA1P01909 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DQA1P01909 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DQA1P01909 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.32■□□□□ 0.68
HLA-DQA1P01909 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HLA-DQA1P01909 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DQA1P01909 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
HLA-DQA1P01909 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DQA1P01909 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HLA-DQA1P01909 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DQA1P01909 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DQA1P01909 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DQA1P01909 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DQA1P01909 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HLA-DQA1P01909 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DQA1P01909 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.28■□□□□ 0.68
HLA-DQA1P01909 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DQA1P01909 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DQA1P01909 ZNRF2P1-201ENST00000441407 443 ntBASIC19.27■□□□□ 0.68
HLA-DQA1P01909 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DQA1P01909 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HLA-DQA1P01909 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.26■□□□□ 0.67
HLA-DQA1P01909 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.26■□□□□ 0.67
HLA-DQA1P01909 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.25■□□□□ 0.67
HLA-DQA1P01909 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.25■□□□□ 0.67
HLA-DQA1P01909 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DQA1P01909 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DQA1P01909 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.25■□□□□ 0.67
HLA-DQA1P01909 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DQA1P01909 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DQA1P01909 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.24■□□□□ 0.67
HLA-DQA1P01909 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DQA1P01909 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DQA1P01909 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
HLA-DQA1P01909 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DQA1P01909 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms