Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
USH2AO75445 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
USH2AO75445 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
USH2AO75445 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
USH2AO75445 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
USH2AO75445 HES4-204ENST00000484667 667 ntTSL 3 BASIC12.02□□□□□ -0.49
USH2AO75445 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC12.01□□□□□ -0.49
USH2AO75445 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
USH2AO75445 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
USH2AO75445 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC12.01□□□□□ -0.49
USH2AO75445 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
USH2AO75445 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
USH2AO75445 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
USH2AO75445 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
USH2AO75445 KRT18P60-201ENST00000312876 1297 ntBASIC12.01□□□□□ -0.49
USH2AO75445 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
USH2AO75445 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC12.01□□□□□ -0.49
USH2AO75445 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
USH2AO75445 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
USH2AO75445 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
USH2AO75445 HES4-202ENST00000428771 1040 ntTSL 2 BASIC11.99□□□□□ -0.49
USH2AO75445 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC11.99□□□□□ -0.49
USH2AO75445 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC11.99□□□□□ -0.49
USH2AO75445 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
USH2AO75445 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
USH2AO75445 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC11.98□□□□□ -0.49
USH2AO75445 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
USH2AO75445 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC11.98□□□□□ -0.49
USH2AO75445 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC11.98□□□□□ -0.49
USH2AO75445 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
USH2AO75445 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
USH2AO75445 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
USH2AO75445 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC11.97□□□□□ -0.49
USH2AO75445 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC11.96□□□□□ -0.49
USH2AO75445 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
USH2AO75445 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
USH2AO75445 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
USH2AO75445 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
USH2AO75445 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
USH2AO75445 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
USH2AO75445 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
USH2AO75445 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC11.95□□□□□ -0.5
USH2AO75445 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
USH2AO75445 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
USH2AO75445 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
USH2AO75445 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
USH2AO75445 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC11.94□□□□□ -0.5
USH2AO75445 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC11.94□□□□□ -0.5
USH2AO75445 THA1P-201ENST00000590384 1145 ntBASIC11.94□□□□□ -0.5
USH2AO75445 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC11.93□□□□□ -0.5
USH2AO75445 AC060814.1-201ENST00000554326 538 ntBASIC11.93□□□□□ -0.5
USH2AO75445 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
USH2AO75445 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
USH2AO75445 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC11.92□□□□□ -0.5
USH2AO75445 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC11.92□□□□□ -0.5
USH2AO75445 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
USH2AO75445 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
USH2AO75445 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
USH2AO75445 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
USH2AO75445 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC11.91□□□□□ -0.5
USH2AO75445 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
USH2AO75445 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
USH2AO75445 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
USH2AO75445 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC11.9□□□□□ -0.5
USH2AO75445 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
USH2AO75445 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC11.9□□□□□ -0.5
USH2AO75445 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
USH2AO75445 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
USH2AO75445 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC11.89□□□□□ -0.51
USH2AO75445 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC11.89□□□□□ -0.51
USH2AO75445 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
USH2AO75445 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
USH2AO75445 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
USH2AO75445 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
USH2AO75445 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC11.88□□□□□ -0.51
USH2AO75445 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
USH2AO75445 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
USH2AO75445 AC131212.1-201ENST00000613771 668 ntBASIC11.87□□□□□ -0.51
USH2AO75445 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
USH2AO75445 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
USH2AO75445 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC11.86□□□□□ -0.51
USH2AO75445 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
USH2AO75445 EI24-212ENST00000615917 1407 ntTSL 2 BASIC11.86□□□□□ -0.51
USH2AO75445 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
USH2AO75445 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC11.86□□□□□ -0.51
USH2AO75445 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
USH2AO75445 AC129492.7-201ENST00000622992 756 ntBASIC11.85□□□□□ -0.51
USH2AO75445 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
USH2AO75445 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC11.84□□□□□ -0.51
USH2AO75445 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
USH2AO75445 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC11.84□□□□□ -0.51
USH2AO75445 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
USH2AO75445 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC11.84□□□□□ -0.51
USH2AO75445 AL356441.2-201ENST00000443009 864 ntBASIC11.84□□□□□ -0.51
USH2AO75445 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
USH2AO75445 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC11.84□□□□□ -0.51
USH2AO75445 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC11.84□□□□□ -0.51
USH2AO75445 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC11.83□□□□□ -0.51
USH2AO75445 AC025884.2-201ENST00000553429 711 ntBASIC11.83□□□□□ -0.52
USH2AO75445 LSM7-203ENST00000585409 512 ntTSL 2 BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms