Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB3O15347 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HMGB3O15347 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB3O15347 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB3O15347 AL135925.1-201ENST00000605920 1701 ntBASIC20.78■□□□□ 0.92
HMGB3O15347 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HMGB3O15347 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB3O15347 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
HMGB3O15347 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB3O15347 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB3O15347 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGB3O15347 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB3O15347 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HMGB3O15347 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB3O15347 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB3O15347 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB3O15347 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB3O15347 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGB3O15347 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 AL121749.1-202ENST00000609313 2153 ntBASIC20.7■□□□□ 0.91
HMGB3O15347 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB3O15347 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB3O15347 AC135731.1-201ENST00000569415 2548 ntBASIC20.69■□□□□ 0.9
HMGB3O15347 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HMGB3O15347 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB3O15347 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB3O15347 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB3O15347 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
HMGB3O15347 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB3O15347 DRD5P2-201ENST00000421395 2012 ntBASIC20.68■□□□□ 0.9
HMGB3O15347 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
HMGB3O15347 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB3O15347 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HMGB3O15347 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HMGB3O15347 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB3O15347 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB3O15347 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
HMGB3O15347 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB3O15347 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB3O15347 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HMGB3O15347 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB3O15347 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGB3O15347 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB3O15347 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGB3O15347 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB3O15347 AL139393.2-201ENST00000608721 2025 ntBASIC20.64■□□□□ 0.89
HMGB3O15347 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB3O15347 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB3O15347 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB3O15347 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB3O15347 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB3O15347 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB3O15347 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HMGB3O15347 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB3O15347 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB3O15347 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB3O15347 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGB3O15347 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
HMGB3O15347 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
HMGB3O15347 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
HMGB3O15347 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HMGB3O15347 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
HMGB3O15347 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
HMGB3O15347 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB3O15347 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB3O15347 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB3O15347 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB3O15347 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB3O15347 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB3O15347 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB3O15347 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB3O15347 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HMGB3O15347 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB3O15347 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms