Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
NKX6-3A6NJ46 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX6-3A6NJ46 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.71■■□□□ 1.07
NKX6-3A6NJ46 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
NKX6-3A6NJ46 AC127502.1-201ENST00000399971 1502 ntBASIC21.7■■□□□ 1.07
NKX6-3A6NJ46 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX6-3A6NJ46 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
NKX6-3A6NJ46 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
NKX6-3A6NJ46 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX6-3A6NJ46 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NKX6-3A6NJ46 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NKX6-3A6NJ46 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX6-3A6NJ46 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX6-3A6NJ46 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX6-3A6NJ46 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.69■■□□□ 1.06
NKX6-3A6NJ46 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NKX6-3A6NJ46 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NKX6-3A6NJ46 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX6-3A6NJ46 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
NKX6-3A6NJ46 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
NKX6-3A6NJ46 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NKX6-3A6NJ46 DUX4L29-201ENST00000425409 679 ntBASIC21.66■■□□□ 1.06
NKX6-3A6NJ46 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX6-3A6NJ46 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX6-3A6NJ46 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NKX6-3A6NJ46 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX6-3A6NJ46 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX6-3A6NJ46 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.62■■□□□ 1.05
NKX6-3A6NJ46 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.62■■□□□ 1.05
NKX6-3A6NJ46 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 AC139426.1-201ENST00000568218 2529 ntBASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NKX6-3A6NJ46 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NKX6-3A6NJ46 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX6-3A6NJ46 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX6-3A6NJ46 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX6-3A6NJ46 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.59■■□□□ 1.05
NKX6-3A6NJ46 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.59■■□□□ 1.05
NKX6-3A6NJ46 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX6-3A6NJ46 AC021231.2-201ENST00000594613 730 ntBASIC21.58■■□□□ 1.05
NKX6-3A6NJ46 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
NKX6-3A6NJ46 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NKX6-3A6NJ46 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX6-3A6NJ46 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NKX6-3A6NJ46 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX6-3A6NJ46 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX6-3A6NJ46 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX6-3A6NJ46 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NKX6-3A6NJ46 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX6-3A6NJ46 LINC00273-201ENST00000539813 1452 ntBASIC21.56■■□□□ 1.04
NKX6-3A6NJ46 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 AP004833.2-201ENST00000532228 1454 ntBASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 AL139393.2-201ENST00000608721 2025 ntBASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.55■■□□□ 1.04
NKX6-3A6NJ46 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 ABCB10P3-201ENST00000561950 2166 ntBASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
NKX6-3A6NJ46 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX6-3A6NJ46 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.53■■□□□ 1.04
NKX6-3A6NJ46 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.53■■□□□ 1.04
NKX6-3A6NJ46 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.53■■□□□ 1.04
NKX6-3A6NJ46 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NKX6-3A6NJ46 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NKX6-3A6NJ46 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
NKX6-3A6NJ46 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.52■■□□□ 1.03
NKX6-3A6NJ46 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.52■■□□□ 1.03
NKX6-3A6NJ46 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NKX6-3A6NJ46 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
NKX6-3A6NJ46 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX6-3A6NJ46 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX6-3A6NJ46 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms