Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.49■■□□□ 1.83
TCRBV7S3A2A0A539 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
TCRBV7S3A2A0A539 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.47■■□□□ 1.83
TCRBV7S3A2A0A539 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
TCRBV7S3A2A0A539 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
TCRBV7S3A2A0A539 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.46■■□□□ 1.83
TCRBV7S3A2A0A539 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
TCRBV7S3A2A0A539 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
TCRBV7S3A2A0A539 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
TCRBV7S3A2A0A539 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.44■■□□□ 1.82
TCRBV7S3A2A0A539 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.43■■□□□ 1.82
TCRBV7S3A2A0A539 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TCRBV7S3A2A0A539 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.42■■□□□ 1.82
TCRBV7S3A2A0A539 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
TCRBV7S3A2A0A539 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TCRBV7S3A2A0A539 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TCRBV7S3A2A0A539 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TCRBV7S3A2A0A539 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TCRBV7S3A2A0A539 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TCRBV7S3A2A0A539 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
TCRBV7S3A2A0A539 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
TCRBV7S3A2A0A539 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
TCRBV7S3A2A0A539 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TCRBV7S3A2A0A539 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
TCRBV7S3A2A0A539 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.4■■□□□ 1.82
TCRBV7S3A2A0A539 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TCRBV7S3A2A0A539 AC127502.1-201ENST00000399971 1502 ntBASIC26.39■■□□□ 1.82
TCRBV7S3A2A0A539 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
TCRBV7S3A2A0A539 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.39■■□□□ 1.82
TCRBV7S3A2A0A539 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.81
TCRBV7S3A2A0A539 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
TCRBV7S3A2A0A539 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TCRBV7S3A2A0A539 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.38■■□□□ 1.81
TCRBV7S3A2A0A539 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
TCRBV7S3A2A0A539 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TCRBV7S3A2A0A539 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
TCRBV7S3A2A0A539 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TCRBV7S3A2A0A539 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TCRBV7S3A2A0A539 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TCRBV7S3A2A0A539 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.35■■□□□ 1.81
TCRBV7S3A2A0A539 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.35■■□□□ 1.81
TCRBV7S3A2A0A539 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.35■■□□□ 1.81
TCRBV7S3A2A0A539 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TCRBV7S3A2A0A539 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.34■■□□□ 1.81
TCRBV7S3A2A0A539 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
TCRBV7S3A2A0A539 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.33■■□□□ 1.81
TCRBV7S3A2A0A539 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TCRBV7S3A2A0A539 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.32■■□□□ 1.8
TCRBV7S3A2A0A539 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.32■■□□□ 1.8
TCRBV7S3A2A0A539 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TCRBV7S3A2A0A539 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TCRBV7S3A2A0A539 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
TCRBV7S3A2A0A539 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC26.31■■□□□ 1.8
TCRBV7S3A2A0A539 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TCRBV7S3A2A0A539 MIR762-201ENST00000390236 83 ntBASIC26.3■■□□□ 1.8
TCRBV7S3A2A0A539 AP004833.2-201ENST00000532228 1454 ntBASIC26.3■■□□□ 1.8
TCRBV7S3A2A0A539 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
TCRBV7S3A2A0A539 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
TCRBV7S3A2A0A539 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TCRBV7S3A2A0A539 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
TCRBV7S3A2A0A539 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.27■■□□□ 1.8
TCRBV7S3A2A0A539 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.27■■□□□ 1.8
TCRBV7S3A2A0A539 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
TCRBV7S3A2A0A539 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
TCRBV7S3A2A0A539 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
TCRBV7S3A2A0A539 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TCRBV7S3A2A0A539 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
TCRBV7S3A2A0A539 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
TCRBV7S3A2A0A539 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TCRBV7S3A2A0A539 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TCRBV7S3A2A0A539 SUZ12P1-203ENST00000578195 985 ntBASIC26.25■■□□□ 1.79
TCRBV7S3A2A0A539 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TCRBV7S3A2A0A539 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
TCRBV7S3A2A0A539 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
TCRBV7S3A2A0A539 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.24■■□□□ 1.79
TCRBV7S3A2A0A539 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TCRBV7S3A2A0A539 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.23■■□□□ 1.79
TCRBV7S3A2A0A539 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
TCRBV7S3A2A0A539 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
TCRBV7S3A2A0A539 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
TCRBV7S3A2A0A539 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
TCRBV7S3A2A0A539 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TCRBV7S3A2A0A539 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.21■■□□□ 1.79
TCRBV7S3A2A0A539 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.2■■□□□ 1.79
TCRBV7S3A2A0A539 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TCRBV7S3A2A0A539 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.2■■□□□ 1.78
TCRBV7S3A2A0A539 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
TCRBV7S3A2A0A539 AL121749.1-202ENST00000609313 2153 ntBASIC26.2■■□□□ 1.78
TCRBV7S3A2A0A539 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
TCRBV7S3A2A0A539 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.19■■□□□ 1.78
TCRBV7S3A2A0A539 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.19■■□□□ 1.78
TCRBV7S3A2A0A539 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.19■■□□□ 1.78
TCRBV7S3A2A0A539 AC100797.4-201ENST00000631653 1827 ntBASIC26.18■■□□□ 1.78
TCRBV7S3A2A0A539 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.18■■□□□ 1.78
TCRBV7S3A2A0A539 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.18■■□□□ 1.78
TCRBV7S3A2A0A539 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
TCRBV7S3A2A0A539 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
TCRBV7S3A2A0A539 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.18■■□□□ 1.78
TCRBV7S3A2A0A539 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TCRBV7S3A2A0A539 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms