Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP3Q9Y6I4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 GCSHP5-201ENST00000443090 522 ntBASIC20.94■□□□□ 0.94
USP3Q9Y6I4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 AC124283.5-201ENST00000624661 1809 ntBASIC20.94■□□□□ 0.94
USP3Q9Y6I4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP3Q9Y6I4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 AL121829.2-201ENST00000620908 328 ntBASIC20.93■□□□□ 0.94
USP3Q9Y6I4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USP3Q9Y6I4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
USP3Q9Y6I4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP3Q9Y6I4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms