Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.82■□□□□ 0.76
VPS35Q96QK1 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 AC008687.6-201ENST00000596318 630 ntBASIC19.82■□□□□ 0.76
VPS35Q96QK1 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 AC006557.6-201ENST00000623071 864 ntBASIC19.82■□□□□ 0.76
VPS35Q96QK1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS35Q96QK1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS35Q96QK1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 AL512408.1-201ENST00000569378 2000 ntBASIC19.81■□□□□ 0.76
VPS35Q96QK1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 ESRRAP1-201ENST00000400596 1257 ntBASIC19.81■□□□□ 0.76
VPS35Q96QK1 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS35Q96QK1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS35Q96QK1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 POU5F1P3-201ENST00000428824 1078 ntBASIC19.8■□□□□ 0.76
VPS35Q96QK1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS35Q96QK1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS35Q96QK1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 KRT16P6-202ENST00000425692 1426 ntBASIC19.79■□□□□ 0.76
VPS35Q96QK1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 AC120498.8-201ENST00000614275 531 ntBASIC19.79■□□□□ 0.76
VPS35Q96QK1 LINC01006-201ENST00000333319 2292 ntBASIC19.79■□□□□ 0.76
VPS35Q96QK1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
VPS35Q96QK1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS35Q96QK1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms