Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SPG11Q96JI7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17■□□□□ 0.31
SPG11Q96JI7 KRT18P48-201ENST00000434763 852 ntBASIC17■□□□□ 0.31
SPG11Q96JI7 AC009947.2-201ENST00000444014 672 ntBASIC17■□□□□ 0.31
SPG11Q96JI7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17■□□□□ 0.31
SPG11Q96JI7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17■□□□□ 0.31
SPG11Q96JI7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17■□□□□ 0.31
SPG11Q96JI7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SPG11Q96JI7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 MESTP1-201ENST00000404287 994 ntBASIC17■□□□□ 0.31
SPG11Q96JI7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17■□□□□ 0.31
SPG11Q96JI7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
SPG11Q96JI7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SPG11Q96JI7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SPG11Q96JI7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 YBX1P2-201ENST00000489612 999 ntBASIC16.99■□□□□ 0.31
SPG11Q96JI7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.99■□□□□ 0.31
SPG11Q96JI7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SPG11Q96JI7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SPG11Q96JI7 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SPG11Q96JI7 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.98■□□□□ 0.31
SPG11Q96JI7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 TSPY14P-201ENST00000303979 915 ntBASIC16.97■□□□□ 0.31
SPG11Q96JI7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SPG11Q96JI7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.97■□□□□ 0.31
SPG11Q96JI7 AC116407.4-201ENST00000623319 1061 ntBASIC16.97■□□□□ 0.31
SPG11Q96JI7 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms