Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 AC233263.1-201ENST00000578059 224 ntBASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-3Q8TAU0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 AC012618.2-201ENST00000428058 849 ntBASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 HES2-206ENST00000489730 730 ntTSL 2 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.74■■□□□ 1.39
NKX2-3Q8TAU0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 AC124283.5-201ENST00000624661 1809 ntBASIC23.73■■□□□ 1.39
NKX2-3Q8TAU0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-3Q8TAU0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 AC133561.5-201ENST00000635547 218 ntBASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-3Q8TAU0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC23.7■■□□□ 1.39
NKX2-3Q8TAU0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 AC005829.2-201ENST00000571422 1056 ntBASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 AC233702.5-201ENST00000584107 538 ntBASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-3Q8TAU0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 SOX15-203ENST00000570788 1093 ntBASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.69■■□□□ 1.38
NKX2-3Q8TAU0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms