Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
SKA3Q8IX90 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SKA3Q8IX90 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
SKA3Q8IX90 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.64■□□□□ 0.41
SKA3Q8IX90 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SKA3Q8IX90 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 AC069152.1-201ENST00000438030 544 ntBASIC17.64■□□□□ 0.41
SKA3Q8IX90 AC097658.1-201ENST00000475555 843 ntBASIC17.64■□□□□ 0.41
SKA3Q8IX90 AC133041.1-202ENST00000642053 222 ntBASIC17.64■□□□□ 0.41
SKA3Q8IX90 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SKA3Q8IX90 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 PTBP1P-201ENST00000554374 1601 ntBASIC17.63■□□□□ 0.41
SKA3Q8IX90 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 AC073210.2-201ENST00000430369 194 ntBASIC17.63■□□□□ 0.41
SKA3Q8IX90 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SKA3Q8IX90 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SKA3Q8IX90 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 MYC-209ENST00000641252 345 ntBASIC17.62■□□□□ 0.41
SKA3Q8IX90 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SKA3Q8IX90 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
SKA3Q8IX90 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SKA3Q8IX90 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SKA3Q8IX90 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SKA3Q8IX90 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SKA3Q8IX90 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.61■□□□□ 0.41
SKA3Q8IX90 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms