Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC26.84■■□□□ 1.89
USP54Q70EL1 EP400NL-214ENST00000641289 2402 ntBASIC26.84■■□□□ 1.89
USP54Q70EL1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP54Q70EL1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP54Q70EL1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC26.84■■□□□ 1.89
USP54Q70EL1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
USP54Q70EL1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
USP54Q70EL1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USP54Q70EL1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC26.83■■□□□ 1.89
USP54Q70EL1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC26.83■■□□□ 1.89
USP54Q70EL1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC26.83■■□□□ 1.89
USP54Q70EL1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
USP54Q70EL1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
USP54Q70EL1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC26.83■■□□□ 1.89
USP54Q70EL1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USP54Q70EL1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
USP54Q70EL1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
USP54Q70EL1 BID-203ENST00000399765 1879 ntTSL 2 BASIC26.83■■□□□ 1.89
USP54Q70EL1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USP54Q70EL1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC26.83■■□□□ 1.89
USP54Q70EL1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC26.82■■□□□ 1.88
USP54Q70EL1 B3GAT3P1-201ENST00000471720 806 ntBASIC26.82■■□□□ 1.88
USP54Q70EL1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC26.82■■□□□ 1.88
USP54Q70EL1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC26.82■■□□□ 1.88
USP54Q70EL1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
USP54Q70EL1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.82■■□□□ 1.88
USP54Q70EL1 TFP1-202ENST00000475455 1573 ntBASIC26.82■■□□□ 1.88
USP54Q70EL1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC26.82■■□□□ 1.88
USP54Q70EL1 DPP3P2-201ENST00000416030 1696 ntBASIC26.82■■□□□ 1.88
USP54Q70EL1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.82■■□□□ 1.88
USP54Q70EL1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC26.82■■□□□ 1.88
USP54Q70EL1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP54Q70EL1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC26.82■■□□□ 1.88
USP54Q70EL1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.82■■□□□ 1.88
USP54Q70EL1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 AC073508.3-201ENST00000619697 1419 ntBASIC26.81■■□□□ 1.88
USP54Q70EL1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 MIR1238-201ENST00000408483 83 ntBASIC26.81■■□□□ 1.88
USP54Q70EL1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC26.81■■□□□ 1.88
USP54Q70EL1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
USP54Q70EL1 AP005242.2-201ENST00000580065 1175 ntBASIC26.81■■□□□ 1.88
USP54Q70EL1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC26.81■■□□□ 1.88
USP54Q70EL1 AL031985.4-201ENST00000642138 673 ntBASIC26.81■■□□□ 1.88
USP54Q70EL1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
USP54Q70EL1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
USP54Q70EL1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC26.8■■□□□ 1.88
USP54Q70EL1 KRT18P35-201ENST00000510488 1269 ntBASIC26.8■■□□□ 1.88
USP54Q70EL1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC26.8■■□□□ 1.88
USP54Q70EL1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC26.8■■□□□ 1.88
USP54Q70EL1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
USP54Q70EL1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USP54Q70EL1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC26.8■■□□□ 1.88
USP54Q70EL1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
USP54Q70EL1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
USP54Q70EL1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC26.79■■□□□ 1.88
USP54Q70EL1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC26.79■■□□□ 1.88
USP54Q70EL1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC26.79■■□□□ 1.88
USP54Q70EL1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.79■■□□□ 1.88
USP54Q70EL1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC26.79■■□□□ 1.88
USP54Q70EL1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC26.79■■□□□ 1.88
USP54Q70EL1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.79■■□□□ 1.88
USP54Q70EL1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP54Q70EL1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC26.79■■□□□ 1.88
USP54Q70EL1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC26.79■■□□□ 1.88
USP54Q70EL1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
USP54Q70EL1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USP54Q70EL1 PHGDH-210ENST00000641115 1638 ntBASIC26.78■■□□□ 1.88
USP54Q70EL1 AC018553.1-201ENST00000616682 1458 ntBASIC26.78■■□□□ 1.88
USP54Q70EL1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USP54Q70EL1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC26.78■■□□□ 1.88
USP54Q70EL1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
USP54Q70EL1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
USP54Q70EL1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USP54Q70EL1 AC004980.1-204ENST00000429707 299 ntBASIC26.78■■□□□ 1.88
USP54Q70EL1 KRT18P57-201ENST00000443599 1254 ntBASIC26.78■■□□□ 1.88
USP54Q70EL1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC26.78■■□□□ 1.88
USP54Q70EL1 CR392000.1-201ENST00000624770 1228 ntBASIC26.78■■□□□ 1.88
USP54Q70EL1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms