Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 KRT18P48-201ENST00000434763 852 ntBASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 AC026271.3-201ENST00000571884 352 ntBASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CSPG4Q6UVK1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CSPG4Q6UVK1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 NIFKP9-201ENST00000419265 221 ntBASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 AL121906.2-201ENST00000621597 723 ntBASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 AC133561.1-201ENST00000568600 2415 ntBASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 AC006011.2-201ENST00000621313 1158 ntBASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CSPG4Q6UVK1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 EP400NL-214ENST00000641289 2402 ntBASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 AC063952.2-201ENST00000498792 1227 ntBASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 GUSBP5-202ENST00000510805 1989 ntBASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 NAPSB-206ENST00000562112 1266 ntBASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CSPG4Q6UVK1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms