Protein–RNA interactions for Protein: P18898

CDC43, Geranylgeranyl transferase type-1 subunit beta, yeastyeast

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC43P18898 SEC21YNL287W 2808 nt1.47□□□□□ -2.17
CDC43P18898 SEC3YER008C 4011 nt1.47□□□□□ -2.17
CDC43P18898 RAD9YDR217C 3930 nt1.46□□□□□ -2.18
CDC43P18898 APL3YBL037W 3078 nt1.46□□□□□ -2.18
CDC43P18898 UTP22YGR090W 3714 nt1.46□□□□□ -2.18
CDC43P18898 SEC1YDR164C 2175 nt1.45□□□□□ -2.18
CDC43P18898 DNF3YMR162C 4971 nt1.45□□□□□ -2.18
CDC43P18898 tM(CAU)Q2tM(CAU)Q2 78 nt1.45□□□□□ -2.18
CDC43P18898 snR190snR190 190 nt1.45□□□□□ -2.18
CDC43P18898 snR45snR45 172 nt1.44□□□□□ -2.18
CDC43P18898 BIR1YJR089W 2865 nt1.44□□□□□ -2.18
CDC43P18898 MSH3YCR092C 3057 nt1.43□□□□□ -2.18
CDC43P18898 YLL066W-BYLL066W-B 171 nt1.43□□□□□ -2.18
CDC43P18898 YLR232WYLR232W 348 nt1.43□□□□□ -2.18
CDC43P18898 SSK2YNR031C 4740 nt1.42□□□□□ -2.18
CDC43P18898 NUP188YML103C 4968 nt1.42□□□□□ -2.18
CDC43P18898 WAR1YML076C 2835 nt1.42□□□□□ -2.18
CDC43P18898 FAB1YFR019W 6837 nt1.41□□□□□ -2.18
CDC43P18898 SAC3YDR159W 3906 nt1.41□□□□□ -2.18
CDC43P18898 SWI4YER111C 3282 nt1.41□□□□□ -2.18
CDC43P18898 CFT1YDR301W 4074 nt1.4□□□□□ -2.19
CDC43P18898 FIG2YCR089W 4830 nt1.4□□□□□ -2.19
CDC43P18898 RPL26BYGR034W 384 nt1.4□□□□□ -2.19
CDC43P18898 YBR072C-AYBR072C-A 162 nt1.4□□□□□ -2.19
CDC43P18898 GEA2YEL022W 4380 nt1.4□□□□□ -2.19
CDC43P18898 SLN1YIL147C 3663 nt1.4□□□□□ -2.19
CDC43P18898 PIK1YNL267W 3201 nt1.4□□□□□ -2.19
CDC43P18898 YJL127W-AYJL127W-A 117 nt1.39□□□□□ -2.19
CDC43P18898 YNL266WYNL266W 420 nt1.39□□□□□ -2.19
CDC43P18898 PKH3YDR466W 2697 nt1.39□□□□□ -2.19
CDC43P18898 YAL037C-AYAL037C-A 93 nt1.38□□□□□ -2.19
CDC43P18898 YPL060C-AYPL060C-A 3315 nt1.38□□□□□ -2.19
CDC43P18898 YGR146C-AYGR146C-A 162 nt1.37□□□□□ -2.19
CDC43P18898 CHS1YNL192W 3396 nt1.37□□□□□ -2.19
CDC43P18898 PRP16YKR086W 3216 nt1.35□□□□□ -2.19
CDC43P18898 AZF1YOR113W 2745 nt1.35□□□□□ -2.19
CDC43P18898 MYO1YHR023W 5787 nt1.34□□□□□ -2.19
CDC43P18898 NNF2YGR089W 2811 nt1.34□□□□□ -2.19
CDC43P18898 RPM2YML091C 3609 nt1.33□□□□□ -2.2
CDC43P18898 SMC1YFL008W 3678 nt1.33□□□□□ -2.2
CDC43P18898 BRR2YER172C 6492 nt1.33□□□□□ -2.2
CDC43P18898 tN(GUU)QtN(GUU)Q 71 nt1.33□□□□□ -2.2
CDC43P18898 YBL071C-BYBL071C-B 99 nt1.32□□□□□ -2.2
CDC43P18898 YBR200W-AYBR200W-A 165 nt1.31□□□□□ -2.2
CDC43P18898 IRA1YBR140C 9279 nt1.3□□□□□ -2.2
CDC43P18898 ROM2YLR371W 4071 nt1.3□□□□□ -2.2
CDC43P18898 snR62snR62 100 nt1.3□□□□□ -2.2
CDC43P18898 PET127YOR017W 2403 nt1.3□□□□□ -2.2
CDC43P18898 MEC1YBR136W 7107 nt1.3□□□□□ -2.2
CDC43P18898 BST1YFL025C 3090 nt1.29□□□□□ -2.2
CDC43P18898 YOL083C-AYOL083C-A 141 nt1.29□□□□□ -2.2
CDC43P18898 NUP145YGL092W 3954 nt1.29□□□□□ -2.2
CDC43P18898 RPS26AYGL189C 360 nt1.28□□□□□ -2.2
CDC43P18898 YPR160W-AYPR160W-A 81 nt1.28□□□□□ -2.2
CDC43P18898 EST2YLR318W 2655 nt1.27□□□□□ -2.21
CDC43P18898 FYV8YGR196C 2454 nt1.27□□□□□ -2.21
CDC43P18898 UBP3YER151C 2739 nt1.26□□□□□ -2.21
CDC43P18898 SEC8YPR055W 3198 nt1.26□□□□□ -2.21
CDC43P18898 tQ(UUG)E2tQ(UUG)E2 72 nt1.26□□□□□ -2.21
CDC43P18898 YMR272W-BYMR272W-B 108 nt1.25□□□□□ -2.21
CDC43P18898 MSN5YDR335W 3675 nt1.24□□□□□ -2.21
CDC43P18898 SPC110YDR356W 2835 nt1.23□□□□□ -2.21
CDC43P18898 YLR399W-AYLR399W-A 105 nt1.23□□□□□ -2.21
CDC43P18898 LAA1YJL207C 6045 nt1.22□□□□□ -2.21
CDC43P18898 BUD3YCL014W 4911 nt1.22□□□□□ -2.21
CDC43P18898 CDC25YLR310C 4770 nt1.22□□□□□ -2.21
CDC43P18898 ULP2YIL031W 3105 nt1.22□□□□□ -2.21
CDC43P18898 YBR196C-AYBR196C-A 150 nt1.2□□□□□ -2.22
CDC43P18898 SEC10YLR166C 2616 nt1.19□□□□□ -2.22
CDC43P18898 CCH1YGR217W 6120 nt1.19□□□□□ -2.22
CDC43P18898 YNL054W-BYNL054W-B 5250 nt1.17□□□□□ -2.22
CDC43P18898 YLR286W-AYLR286W-A 135 nt1.17□□□□□ -2.22
CDC43P18898 YOL164W-AYOL164W-A 183 nt1.17□□□□□ -2.22
CDC43P18898 SXM1YDR395W 2835 nt1.16□□□□□ -2.22
CDC43P18898 YSP1YHR155W 3687 nt1.16□□□□□ -2.22
CDC43P18898 ORC3YLL004W 1851 nt1.15□□□□□ -2.23
CDC43P18898 YNL284C-BYNL284C-B 5268 nt1.15□□□□□ -2.23
CDC43P18898 HKR1YDR420W 5409 nt1.14□□□□□ -2.23
CDC43P18898 YDR034C-AYDR034C-A 177 nt1.14□□□□□ -2.23
CDC43P18898 GLG1YKR058W 1851 nt1.14□□□□□ -2.23
CDC43P18898 NUP192YJL039C 5052 nt1.11□□□□□ -2.23
CDC43P18898 YGR240C-AYGR240C-A 201 nt1.11□□□□□ -2.23
CDC43P18898 EST1YLR233C 2100 nt1.11□□□□□ -2.23
CDC43P18898 BEM3YPL115C 3387 nt1.11□□□□□ -2.23
CDC43P18898 NST1YNL091W 3723 nt1.11□□□□□ -2.23
CDC43P18898 RKR1YMR247C 4689 nt1.1□□□□□ -2.23
CDC43P18898 BUL2YML111W 2763 nt1.09□□□□□ -2.23
CDC43P18898 YGR130CYGR130C 2451 nt1.08□□□□□ -2.24
CDC43P18898 tD(GUC)QtD(GUC)Q 75 nt1.08□□□□□ -2.24
CDC43P18898 SPT7YBR081C 3999 nt1.08□□□□□ -2.24
CDC43P18898 snR69snR69 101 nt1.07□□□□□ -2.24
CDC43P18898 ANS1YHR126C 480 nt1.07□□□□□ -2.24
CDC43P18898 CSE1YGL238W 2883 nt1.06□□□□□ -2.24
CDC43P18898 snR47snR47 99 nt1.04□□□□□ -2.24
CDC43P18898 CLU1YMR012W 3834 nt1.04□□□□□ -2.24
CDC43P18898 YBL100W-CYBL100W-C 120 nt1.02□□□□□ -2.25
CDC43P18898 YLL006W-AYLL006W-A 177 nt1.01□□□□□ -2.25
CDC43P18898 YPR117WYPR117W 7470 nt1□□□□□ -2.25
CDC43P18898 NIP1YMR309C 2439 nt0.99□□□□□ -2.25
CDC43P18898 YLR299C-AYLR299C-A 93 nt0.99□□□□□ -2.25
Retrieved 100 of 7,029 protein–RNA pairs in 27.3 ms