Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.57■□□□□ 0.72
TNFP01375 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFP01375 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.57■□□□□ 0.72
TNFP01375 AC004264.1-201ENST00000608354 794 ntBASIC19.57■□□□□ 0.72
TNFP01375 AL049637.2-201ENST00000641778 930 ntBASIC19.57■□□□□ 0.72
TNFP01375 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFP01375 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFP01375 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFP01375 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 KRT17P2-201ENST00000300992 1314 ntBASIC19.56■□□□□ 0.72
TNFP01375 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFP01375 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFP01375 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
TNFP01375 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFP01375 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TNFP01375 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.56■□□□□ 0.72
TNFP01375 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.56■□□□□ 0.72
TNFP01375 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFP01375 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TNFP01375 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFP01375 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.55■□□□□ 0.72
TNFP01375 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.55■□□□□ 0.72
TNFP01375 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TNFP01375 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.55■□□□□ 0.72
TNFP01375 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TNFP01375 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.55■□□□□ 0.72
TNFP01375 KRT16P6-202ENST00000425692 1426 ntBASIC19.55■□□□□ 0.72
TNFP01375 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.55■□□□□ 0.72
TNFP01375 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.55■□□□□ 0.72
TNFP01375 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.55■□□□□ 0.72
TNFP01375 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TNFP01375 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.55■□□□□ 0.72
TNFP01375 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.54■□□□□ 0.72
TNFP01375 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
TNFP01375 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.54■□□□□ 0.72
TNFP01375 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 TSPY7P-201ENST00000431358 1114 ntBASIC19.54■□□□□ 0.72
TNFP01375 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TNFP01375 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.54■□□□□ 0.72
TNFP01375 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.54■□□□□ 0.72
TNFP01375 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.54■□□□□ 0.72
TNFP01375 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TNFP01375 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 HTR7P1-201ENST00000538670 1336 ntBASIC19.53■□□□□ 0.72
TNFP01375 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
TNFP01375 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.53■□□□□ 0.72
TNFP01375 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
TNFP01375 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
TNFP01375 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
TNFP01375 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
TNFP01375 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TNFP01375 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.53■□□□□ 0.72
TNFP01375 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.53■□□□□ 0.72
TNFP01375 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
TNFP01375 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
TNFP01375 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TNFP01375 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms