Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.288e-7■■□□□ 13.4
DDX55Q8NHQ9 UQCRQ-206ENST00000498309 874 ntTSL 219.01■□□□□ 0.638e-7■■□□□ 13.4
DDX55Q8NHQ9 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.398e-7■■□□□ 13.4
DDX55Q8NHQ9 UQCRQ-202ENST00000378667 429 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.478e-7■■□□□ 13.4
DDX55Q8NHQ9 UQCRQ-205ENST00000496429 258 ntTSL 29.52□□□□□ -0.898e-7■■□□□ 13.4
DDX55Q8NHQ9 SERF2-211ENST00000430901 483 ntTSL 417.77■□□□□ 0.443e-22■■□□□ 13.4
DDX55Q8NHQ9 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.05■□□□□ 0.965e-25■■□□□ 13.4
DDX55Q8NHQ9 NEDD8-208ENST00000560427 654 ntTSL 215.66■□□□□ 0.13e-15■■□□□ 13.4
DDX55Q8NHQ9 PRRC2A-214ENST00000492691 1118 ntTSL 214.8□□□□□ -0.041e-9■■□□□ 13.4
DDX55Q8NHQ9 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC9.07□□□□□ -0.962e-13■■□□□ 13.4
DDX55Q8NHQ9 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.033e-7■■□□□ 13.4
DDX55Q8NHQ9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.643e-10■■□□□ 13.4
DDX55Q8NHQ9 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.553e-6■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-208ENST00000513781 759 ntTSL 318.21■□□□□ 0.513e-17■■□□□ 13.4
DDX55Q8NHQ9 CHKA-203ENST00000525155 1201 ntTSL 515.1■□□□□ 0.013e-6■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-204ENST00000503641 539 ntTSL 3 BASIC14.14□□□□□ -0.153e-17■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-209ENST00000514808 359 ntTSL 2 BASIC13.58□□□□□ -0.243e-6■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-206ENST00000506855 468 ntTSL 3 BASIC13.14□□□□□ -0.313e-17■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-205ENST00000504591 401 ntTSL 213.14□□□□□ -0.313e-6■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-202ENST00000393366 614 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.43e-17■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-201ENST00000355938 598 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.463e-17■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-203ENST00000502964 679 ntTSL 212.02□□□□□ -0.493e-17■■□□□ 13.4
DDX55Q8NHQ9 CHKA-207ENST00000533728 662 ntTSL 210.61□□□□□ -0.713e-6■■□□□ 13.4
DDX55Q8NHQ9 ATP5G1-207ENST00000513347 2214 ntTSL 29.86□□□□□ -0.833e-17■■□□□ 13.4
DDX55Q8NHQ9 DYNC1H1-204ENST00000555062 1351 ntTSL 221.54■■□□□ 1.043e-7■■□□□ 13.4
DDX55Q8NHQ9 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.53e-7■■□□□ 13.4
DDX55Q8NHQ9 LYPLA2-210ENST00000495365 842 ntTSL 219.96■□□□□ 0.793e-6■■□□□ 13.4
DDX55Q8NHQ9 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC17.7■□□□□ 0.423e-6■■□□□ 13.4
DDX55Q8NHQ9 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.659e-13■■□□□ 13.4
DDX55Q8NHQ9 LTBP4-204ENST00000318809 1700 ntTSL 220.59■□□□□ 0.895e-7■■□□□ 13.4
DDX55Q8NHQ9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.855e-7■■□□□ 13.4
DDX55Q8NHQ9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.755e-7■■□□□ 13.4
DDX55Q8NHQ9 LTBP4-212ENST00000595118 2446 ntTSL 218.58■□□□□ 0.565e-7■■□□□ 13.4
DDX55Q8NHQ9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.465e-7■■□□□ 13.4
DDX55Q8NHQ9 LTBP4-202ENST00000243562 3140 ntTSL 214.57□□□□□ -0.085e-7■■□□□ 13.4
DDX55Q8NHQ9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.782e-11■■□□□ 13.4
DDX55Q8NHQ9 CALM3-205ENST00000486500 2536 ntTSL 213.04□□□□□ -0.322e-11■■□□□ 13.4
DDX55Q8NHQ9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.415e-8■■□□□ 13.4
DDX55Q8NHQ9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.875e-8■■□□□ 13.4
DDX55Q8NHQ9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.875e-8■■□□□ 13.4
DDX55Q8NHQ9 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.795e-8■■□□□ 13.4
DDX55Q8NHQ9 FXYD1-206ENST00000588715 486 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.495e-8■■□□□ 13.4
DDX55Q8NHQ9 FXYD1-205ENST00000588607 619 ntAPPRIS P1 TSL 3 BASIC9.64□□□□□ -0.875e-8■■□□□ 13.4
DDX55Q8NHQ9 CD99-208ENST00000482405 842 ntTSL 225.45■■□□□ 1.667e-8■■□□□ 13.4
DDX55Q8NHQ9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.557e-8■■□□□ 13.4
DDX55Q8NHQ9 CD99-207ENST00000482293 466 ntTSL 224.42■■□□□ 1.57e-8■■□□□ 13.4
DDX55Q8NHQ9 CD99-206ENST00000449611 604 ntAPPRIS ALT2 TSL 522.6■■□□□ 1.217e-8■■□□□ 13.4
DDX55Q8NHQ9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.294e-7■■□□□ 13.4
DDX55Q8NHQ9 DAPK3-205ENST00000595279 2058 ntTSL 222.81■■□□□ 1.244e-7■■□□□ 13.4
DDX55Q8NHQ9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.234e-7■■□□□ 13.4
DDX55Q8NHQ9 DNPH1-203ENST00000505042 396 ntTSL 216.15■□□□□ 0.187e-14■■□□□ 13.4
DDX55Q8NHQ9 FAM209A-202ENST00000481560 666 ntTSL 58.01□□□□□ -1.134e-6■■□□□ 13.4
DDX55Q8NHQ9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.459e-9■■□□□ 13.4
DDX55Q8NHQ9 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.119e-9■■□□□ 13.4
DDX55Q8NHQ9 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.049e-9■■□□□ 13.4
DDX55Q8NHQ9 NDUFS7-217ENST00000591358 3743 nt14.35□□□□□ -0.113e-8■■□□□ 13.4
DDX55Q8NHQ9 ACAA1-212ENST00000460424 538 ntTSL 428.17■■■□□ 2.12e-7■■□□□ 13.4
DDX55Q8NHQ9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC27.86■■■□□ 2.052e-7■■□□□ 13.4
DDX55Q8NHQ9 ACAA1-218ENST00000489559 579 ntTSL 427.3■■□□□ 1.962e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-210ENST00000514031 950 ntTSL 225.76■■□□□ 1.712e-7■■□□□ 13.4
DDX55Q8NHQ9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.62e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-203ENST00000503596 1589 ntTSL 524.25■■□□□ 1.472e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.52■■□□□ 1.362e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.47■■□□□ 1.352e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.332e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC23.05■■□□□ 1.282e-7■■□□□ 13.4
DDX55Q8NHQ9 ACAA1-217ENST00000484284 580 ntTSL 222.38■■□□□ 1.172e-7■■□□□ 13.4
DDX55Q8NHQ9 UNC13D-212ENST00000589670 668 ntTSL 322.01■■□□□ 1.112e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.092e-7■■□□□ 13.4
DDX55Q8NHQ9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.072e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-207ENST00000508276 697 ntTSL 520.16■□□□□ 0.822e-7■■□□□ 13.4
DDX55Q8NHQ9 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.672e-31■■□□□ 13.4
DDX55Q8NHQ9 NDUFB7-202ENST00000593353 529 ntTSL 219.24■□□□□ 0.672e-31■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-204ENST00000507272 1575 ntTSL 518.67■□□□□ 0.582e-7■■□□□ 13.4
DDX55Q8NHQ9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-7■■□□□ 13.4
DDX55Q8NHQ9 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.132e-7■■□□□ 13.4
DDX55Q8NHQ9 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-7■■□□□ 13.4
DDX55Q8NHQ9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.112e-7■■□□□ 13.4
DDX55Q8NHQ9 MFSD10-209ENST00000512781 729 ntTSL 515.62■□□□□ 0.092e-7■■□□□ 13.4
DDX55Q8NHQ9 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 02e-7■■□□□ 13.4
DDX55Q8NHQ9 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.192e-7■■□□□ 13.4
DDX55Q8NHQ9 RAB5B-206ENST00000549505 3148 ntTSL 1 (best)11.04□□□□□ -0.642e-7■■□□□ 13.4
DDX55Q8NHQ9 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.652e-7■■□□□ 13.4
DDX55Q8NHQ9 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.932e-7■■□□□ 13.4
DDX55Q8NHQ9 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.952e-7■■□□□ 13.4
DDX55Q8NHQ9 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.15e-14■■□□□ 13.4
DDX55Q8NHQ9 NT5DC2-207ENST00000469616 453 ntTSL 27.58□□□□□ -1.22e-7■■□□□ 13.4
DDX55Q8NHQ9 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.212e-7■■□□□ 13.4
DDX55Q8NHQ9 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.462e-7■■□□□ 13.4
DDX55Q8NHQ9 MYL6B-201ENST00000405661 1258 ntTSL 217.51■□□□□ 0.392e-7■■□□□ 13.4
DDX55Q8NHQ9 MYL6B-206ENST00000550152 639 ntTSL 314.59□□□□□ -0.072e-7■■□□□ 13.4
DDX55Q8NHQ9 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.264e-14■■□□□ 13.4
DDX55Q8NHQ9 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.45■□□□□ 0.224e-14■■□□□ 13.4
DDX55Q8NHQ9 PCLAF-201ENST00000300035 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.064e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-209ENST00000634259 825 ntTSL 514.36□□□□□ -0.114e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-204ENST00000635160 692 ntTSL 49.14□□□□□ -0.954e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-211ENST00000560278 595 ntTSL 48.61□□□□□ -1.034e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-208ENST00000635511 920 ntTSL 58.61□□□□□ -1.034e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-210ENST00000635593 668 ntTSL 58.52□□□□□ -1.054e-14■■□□□ 13.4
DDX55Q8NHQ9 AC087632.1-213ENST00000634538 924 ntTSL 58.52□□□□□ -1.054e-14■■□□□ 13.4
Retrieved 100 of 15,504 protein–RNA pairs in 155.5 ms