RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 AEBP2Q6ZN18 517 aaPredicted RBP31.66■■■□□ 2.66
NEDD8-203ENST00000524927 CHIC1Q5VXU3 224 aa29.76■■■□□ 2.35
NEDD8-203ENST00000524927 SENP3Q9H4L4 574 aaPredicted RBP26.76■■□□□ 1.87
NEDD8-203ENST00000524927 PHF23Q9BUL5 403 aaPredicted RBP26.54■■□□□ 1.84
NEDD8-203ENST00000524927 FOXD1Q16676 465 aa25.14■■□□□ 1.62
NEDD8-203ENST00000524927 PLPPR3Q6T4P5 718 aa23.61■■□□□ 1.37
NEDD8-203ENST00000524927 PPP6R1Q9UPN7 881 aa23.51■■□□□ 1.35
NEDD8-203ENST00000524927 POTEDQ86YR6 584 aa23.45■■□□□ 1.34
NEDD8-203ENST00000524927 MSH5O43196 834 aa23.39■■□□□ 1.33
NEDD8-203ENST00000524927 ADRA2BP18089 450 aa23.36■■□□□ 1.33
NEDD8-203ENST00000524927 PIAS4Q8N2W9 510 aaPredicted RBP23.35■■□□□ 1.33
NEDD8-203ENST00000524927 MAPK8IP2Q13387 824 aaPredicted RBP21.57■■□□□ 1.04
NEDD8-203ENST00000524927 DMRT2Q9Y5R5 561 aa21.27■■□□□ 1
NEDD8-203ENST00000524927 SCAF1Q9H7N4 1312 aaKnown RBP21.07■□□□□ 0.96
NEDD8-203ENST00000524927 PPP4R3CPQ6ZMV5 832 aa20.78■□□□□ 0.92
NEDD8-203ENST00000524927 HOXD11P31277 338 aaPredicted RBP20.43■□□□□ 0.86
NEDD8-203ENST00000524927 DCAF8L1A6NGE4 600 aa20.39■□□□□ 0.85
NEDD8-203ENST00000524927 CNKSR2Q8WXI2 1034 aa20.33■□□□□ 0.85
NEDD8-203ENST00000524927 CACNB1Q02641 598 aaPredicted RBP20.25■□□□□ 0.83
NEDD8-203ENST00000524927 RNF216Q9NWF9 866 aaPredicted RBP20.2■□□□□ 0.82
NEDD8-203ENST00000524927 RNF39Q9H2S5 420 aa20.04■□□□□ 0.8
NEDD8-203ENST00000524927 NCBP3Q53F19 620 aaKnown RBP19.75■□□□□ 0.75
NEDD8-203ENST00000524927 NPM3O75607 178 aaKnown RBP19.68■□□□□ 0.74
NEDD8-203ENST00000524927 C1QBPQ07021 282 aaKnown RBP19.65■□□□□ 0.74
NEDD8-203ENST00000524927 DNAJC5BQ9UF47 199 aa19.61■□□□□ 0.73
NEDD8-203ENST00000524927 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.41■□□□□ 0.71e-7■■■□□ 15.4
NEDD8-203ENST00000524927 KCNA4P22459 653 aa19.22■□□□□ 0.67
NEDD8-203ENST00000524927 U3KPZ7 1027 aaPredicted RBP19.1■□□□□ 0.65
NEDD8-203ENST00000524927 SPINK5Q9NQ38 1064 aaPredicted RBP18.93■□□□□ 0.62
NEDD8-203ENST00000524927 SLC4A2P04920 1241 aa18.9■□□□□ 0.62
NEDD8-203ENST00000524927 CAPN15O75808 1086 aa18.76■□□□□ 0.59
NEDD8-203ENST00000524927 DSG3P32926 999 aa18.76■□□□□ 0.59
NEDD8-203ENST00000524927 TRHP20396 242 aaPredicted RBP18.47■□□□□ 0.55
NEDD8-203ENST00000524927 ABCB7O75027 752 aa18.41■□□□□ 0.54
NEDD8-203ENST00000524927 POTEHQ6S545 545 aa18.29■□□□□ 0.52
NEDD8-203ENST00000524927 ZNF219Q9P2Y4 722 aaPredicted RBP18.27■□□□□ 0.52
NEDD8-203ENST00000524927 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.24■□□□□ 0.51
NEDD8-203ENST00000524927 HNRNPUL2Q1KMD3 747 aaKnown RBP18.24■□□□□ 0.51
NEDD8-203ENST00000524927 APLP2Q06481 763 aa18.21■□□□□ 0.51
NEDD8-203ENST00000524927 NISCHQ9Y2I1 1504 aa18.2■□□□□ 0.5
NEDD8-203ENST00000524927 SAMD1Q6SPF0 538 aaPredicted RBP18.19■□□□□ 0.5
NEDD8-203ENST00000524927 MYCNP04198 464 aaPredicted RBP18.07■□□□□ 0.48
NEDD8-203ENST00000524927 SLC4A1APQ9BWU0 796 aaKnown RBP17.99■□□□□ 0.47
NEDD8-203ENST00000524927 ABCC9O60706 1549 aa17.96■□□□□ 0.47
NEDD8-203ENST00000524927 POLA2Q14181 598 aa17.95■□□□□ 0.46
NEDD8-203ENST00000524927 EHMT2Q96KQ7 1210 aa17.92■□□□□ 0.46
NEDD8-203ENST00000524927 ATF5Q9Y2D1 282 aaPredicted RBP17.92■□□□□ 0.46
NEDD8-203ENST00000524927 FOXD4L1Q9NU39 408 aa17.84■□□□□ 0.45
NEDD8-203ENST00000524927 ZBTB22O15209 634 aa17.75■□□□□ 0.43
NEDD8-203ENST00000524927 RBM42Q9BTD8 480 aaKnown RBP17.69■□□□□ 0.42
NEDD8-203ENST00000524927 CHRDL2Q6WN34 429 aa17.5■□□□□ 0.39
NEDD8-203ENST00000524927 DNAJC5Q9H3Z4 198 aa17.41■□□□□ 0.38
NEDD8-203ENST00000524927 CSRNP3Q8WYN3 585 aa17.4■□□□□ 0.38
NEDD8-203ENST00000524927 OSCARQ8IYS5 282 aa17.39■□□□□ 0.37
NEDD8-203ENST00000524927 AKT1S1Q96B36 256 aa17.34■□□□□ 0.37
NEDD8-203ENST00000524927 ZBTB12Q9Y330 459 aaPredicted RBP17.34■□□□□ 0.37
NEDD8-203ENST00000524927 REM2Q8IYK8 340 aaPredicted RBP17.27■□□□□ 0.36
NEDD8-203ENST00000524927 ATXN8OSP0DMR3 200 aa17.23■□□□□ 0.35
NEDD8-203ENST00000524927 PIP4P2Q8N4L2 257 aa17.11■□□□□ 0.33
NEDD8-203ENST00000524927 PITPNM1O00562 1244 aa17.1■□□□□ 0.33
NEDD8-203ENST00000524927 MKRN4PQ13434 485 aaPredicted RBP17.05■□□□□ 0.32
NEDD8-203ENST00000524927 SP7Q8TDD2 431 aaPredicted RBP16.98■□□□□ 0.31
NEDD8-203ENST00000524927 FXR2P51116 673 aaKnown RBP eCLIP16.97■□□□□ 0.31
NEDD8-203ENST00000524927 FBLN2P98095 1184 aa16.92■□□□□ 0.3
NEDD8-203ENST00000524927 SPDYE2BA6NHP3 402 aa16.9■□□□□ 0.3
NEDD8-203ENST00000524927 SPDYE6P0CI01 402 aa16.9■□□□□ 0.3
NEDD8-203ENST00000524927 SPDYE2Q495Y8 402 aa16.9■□□□□ 0.3
NEDD8-203ENST00000524927 CCDC180Q9P1Z9 1646 aa16.86■□□□□ 0.29
NEDD8-203ENST00000524927 EVX2Q03828 476 aa16.79■□□□□ 0.28
NEDD8-203ENST00000524927 HAX1O00165 279 aa16.78■□□□□ 0.28
NEDD8-203ENST00000524927 SSUH2Q9Y2M2 353 aa16.74■□□□□ 0.27
NEDD8-203ENST00000524927 ZNF692Q9BU19 519 aaPredicted RBP16.73■□□□□ 0.27
NEDD8-203ENST00000524927 CLEC11AQ9Y240 323 aa16.7■□□□□ 0.26
NEDD8-203ENST00000524927 PRKAR2AP13861 404 aaKnown RBP16.63■□□□□ 0.25
NEDD8-203ENST00000524927 SPDYE1Q8NFV5 336 aaPredicted RBP16.63■□□□□ 0.25
NEDD8-203ENST00000524927 RB1CC1Q8TDY2 1594 aa16.63■□□□□ 0.25
NEDD8-203ENST00000524927 PABPN1Q86U42 306 aaKnown RBP eCLIP16.52■□□□□ 0.24
NEDD8-203ENST00000524927 CHADLQ6NUI6 762 aa16.51■□□□□ 0.23
NEDD8-203ENST00000524927 C19orf67A6NJJ6 358 aa16.43■□□□□ 0.22
NEDD8-203ENST00000524927 PRR29P0C7W0 189 aa16.36■□□□□ 0.21
NEDD8-203ENST00000524927 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
NEDD8-203ENST00000524927 GABBR2O75899 941 aa16.25■□□□□ 0.19
NEDD8-203ENST00000524927 NACADO15069 1562 aa16.25■□□□□ 0.19
NEDD8-203ENST00000524927 CC2D2AQ9P2K1 1620 aa16.18■□□□□ 0.18
NEDD8-203ENST00000524927 BICRAQ9NZM4 1560 aa16.16■□□□□ 0.18
NEDD8-203ENST00000524927 UNC13AQ9UPW8 1703 aa16.15■□□□□ 0.18
NEDD8-203ENST00000524927 FARP1Q9Y4F1 1045 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-203ENST00000524927 CD44P16070 742 aaKnown RBP16.06■□□□□ 0.16
NEDD8-203ENST00000524927 CUX2O14529 1486 aa16.05■□□□□ 0.16
NEDD8-203ENST00000524927 TRIM41Q8WV44 630 aa16.04■□□□□ 0.16
NEDD8-203ENST00000524927 SPDYE4A6NLX3 237 aa16.03■□□□□ 0.16
NEDD8-203ENST00000524927 CREBZFQ9NS37 354 aa16.03■□□□□ 0.16
NEDD8-203ENST00000524927 POTEIP0CG38 1075 aa16.01■□□□□ 0.15
NEDD8-203ENST00000524927 SHROOM4Q9ULL8 1493 aa15.95■□□□□ 0.14
NEDD8-203ENST00000524927 LHX8Q68G74 356 aa15.92■□□□□ 0.14
NEDD8-203ENST00000524927 EIF4G1Q04637 1599 aaKnown RBP15.87■□□□□ 0.13
NEDD8-203ENST00000524927 STAG3Q9UJ98 1225 aa15.87■□□□□ 0.13
NEDD8-203ENST00000524927 CLCN6P51797 869 aa15.83■□□□□ 0.12
NEDD8-203ENST00000524927 ZRANB1Q9UGI0 708 aa15.83■□□□□ 0.12
NEDD8-203ENST00000524927 DCAF8L2P0C7V8 631 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms