RNA–Protein interactions for RNA: ENST00000243562.13

LTBP4-202, Transcript of latent transforming growth factor beta binding protein 4, humanhuman

TSL 2

Gene LTBP4, Length 3,140 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP4-202ENST00000243562 NISCHQ9Y2I1 1504 aa28.43■■■□□ 2.14
LTBP4-202ENST00000243562 SHROOM4Q9ULL8 1493 aa24.77■■□□□ 1.56
LTBP4-202ENST00000243562 SUPT5HO00267 1087 aaKnown RBP24.46■■□□□ 1.51
LTBP4-202ENST00000243562 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
LTBP4-202ENST00000243562 ZCCHC6Q5VYS8 1495 aaKnown RBP24.04■■□□□ 1.44
LTBP4-202ENST00000243562 CCDC180Q9P1Z9 1646 aa23.87■■□□□ 1.41
LTBP4-202ENST00000243562 CHIC1Q5VXU3 224 aa23.71■■□□□ 1.39
LTBP4-202ENST00000243562 MYO15BQ96JP2 1530 aa23.56■■□□□ 1.36
LTBP4-202ENST00000243562 HRCP23327 699 aa23.38■■□□□ 1.33
LTBP4-202ENST00000243562 PCGF6Q9BYE7 350 aa23.36■■□□□ 1.33
LTBP4-202ENST00000243562 DCAF1Q9Y4B6 1507 aa23.17■■□□□ 1.3
LTBP4-202ENST00000243562 LOC105371045A0A1W2PR82 267 aa23.15■■□□□ 1.3
LTBP4-202ENST00000243562 PPARGC1BQ86YN6 1023 aaKnown RBP22.97■■□□□ 1.27
LTBP4-202ENST00000243562 TRIM26Q12899 539 aaPredicted RBP22.75■■□□□ 1.23
LTBP4-202ENST00000243562 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
LTBP4-202ENST00000243562 ABCC9O60706 1549 aa22.69■■□□□ 1.22
LTBP4-202ENST00000243562 SCRIBQ14160 1630 aa22.67■■□□□ 1.22
LTBP4-202ENST00000243562 RSF1Q96T23 1441 aaPredicted RBP22.66■■□□□ 1.22
LTBP4-202ENST00000243562 FAM9AQ8IZU1 332 aaPredicted RBP22.64■■□□□ 1.22
LTBP4-202ENST00000243562 EHMT2Q96KQ7 1210 aa22.55■■□□□ 1.2
LTBP4-202ENST00000243562 RB1CC1Q8TDY2 1594 aa22.4■■□□□ 1.18
LTBP4-202ENST00000243562 ZEB1P37275 1124 aaPredicted RBP22.35■■□□□ 1.17
LTBP4-202ENST00000243562 PELP1Q8IZL8 1130 aaKnown RBP22.34■■□□□ 1.17
LTBP4-202ENST00000243562 CECR2Q9BXF3 1484 aa22.26■■□□□ 1.15
LTBP4-202ENST00000243562 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
LTBP4-202ENST00000243562 NACADO15069 1562 aa22.14■■□□□ 1.14
LTBP4-202ENST00000243562 WIZO95785 1651 aa22.03■■□□□ 1.12
LTBP4-202ENST00000243562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.9■■□□□ 1.1
LTBP4-202ENST00000243562 CCER1Q8TC90 406 aaPredicted RBP21.89■■□□□ 1.09
LTBP4-202ENST00000243562 TTBK1Q5TCY1 1321 aaPredicted RBP21.86■■□□□ 1.09
LTBP4-202ENST00000243562 BAZ1AQ9NRL2 1556 aaPredicted RBP21.82■■□□□ 1.08
LTBP4-202ENST00000243562 MYT1Q01538 1121 aa21.78■■□□□ 1.08
LTBP4-202ENST00000243562 SCAF1Q9H7N4 1312 aaKnown RBP21.71■■□□□ 1.07
LTBP4-202ENST00000243562 ABCC8Q09428 1581 aa21.7■■□□□ 1.06
LTBP4-202ENST00000243562 CCDC88BA6NC98 1476 aa21.68■■□□□ 1.06
LTBP4-202ENST00000243562 UBTFP17480 764 aaKnown RBP21.65■■□□□ 1.06
LTBP4-202ENST00000243562 EIF4G1Q04637 1599 aaKnown RBP21.64■■□□□ 1.05
LTBP4-202ENST00000243562 TOP2AP11388 1531 aaKnown RBP21.63■■□□□ 1.05
LTBP4-202ENST00000243562 SOGA1O94964 1423 aa21.59■■□□□ 1.05
LTBP4-202ENST00000243562 CEP162Q5TB80 1403 aa21.58■■□□□ 1.05
LTBP4-202ENST00000243562 CSRNP3Q8WYN3 585 aa21.58■■□□□ 1.04
LTBP4-202ENST00000243562 SMARCA4P51532 1647 aa21.56■■□□□ 1.04
LTBP4-202ENST00000243562 SMARCA2P51531 1590 aa21.53■■□□□ 1.04
LTBP4-202ENST00000243562 DIEXFQ68CQ4 756 aaKnown RBP21.52■■□□□ 1.04
LTBP4-202ENST00000243562 PABPN1Q86U42 306 aaKnown RBP eCLIP21.52■■□□□ 1.04
LTBP4-202ENST00000243562 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
LTBP4-202ENST00000243562 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
LTBP4-202ENST00000243562 RUSC2Q8N2Y8 1516 aa21.46■■□□□ 1.03
LTBP4-202ENST00000243562 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
LTBP4-202ENST00000243562 NEUROD1Q13562 356 aa21.42■■□□□ 1.02
LTBP4-202ENST00000243562 EEA1Q15075 1411 aa21.41■■□□□ 1.02
LTBP4-202ENST00000243562 CENPBP07199 599 aaPredicted RBP21.36■■□□□ 1.01
LTBP4-202ENST00000243562 GOLGA3Q08378 1498 aa21.33■■□□□ 1.01
LTBP4-202ENST00000243562 UNC13AQ9UPW8 1703 aa21.32■■□□□ 1
LTBP4-202ENST00000243562 HNRNPUL2Q1KMD3 747 aaKnown RBP21.32■■□□□ 1
LTBP4-202ENST00000243562 RANGAP1P46060 587 aaPredicted RBP21.29■■□□□ 1
LTBP4-202ENST00000243562 GTF3C3Q9Y5Q9 886 aa21.27■■□□□ 1
LTBP4-202ENST00000243562 ZNF316A6NFI3 1004 aaPredicted RBP21.27■□□□□ 0.99
LTBP4-202ENST00000243562 APLP2Q06481 763 aa21.24■□□□□ 0.99
LTBP4-202ENST00000243562 CEP164Q9UPV0 1460 aa21.17■□□□□ 0.98
LTBP4-202ENST00000243562 CLIP1P30622 1438 aa21.17■□□□□ 0.98
LTBP4-202ENST00000243562 YTHDC1Q96MU7 727 aaKnown RBP21.16■□□□□ 0.98
LTBP4-202ENST00000243562 BICRAQ9NZM4 1560 aa21.12■□□□□ 0.97
LTBP4-202ENST00000243562 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
LTBP4-202ENST00000243562 BAZ1BQ9UIG0 1483 aaKnown RBP21.04■□□□□ 0.96
LTBP4-202ENST00000243562 ATAD2BQ9ULI0 1458 aa21.04■□□□□ 0.96
LTBP4-202ENST00000243562 VPS8Q8N3P4 1428 aa21.03■□□□□ 0.96
LTBP4-202ENST00000243562 PEG3Q9GZU2 1588 aa21.03■□□□□ 0.96
LTBP4-202ENST00000243562 KIF21BO75037 1637 aa21.02■□□□□ 0.96
LTBP4-202ENST00000243562 MIER1Q8N108 512 aa21.02■□□□□ 0.95
LTBP4-202ENST00000243562 RAPGEF2Q9Y4G8 1499 aa21.02■□□□□ 0.95
LTBP4-202ENST00000243562 KANK4Q5T7N3 995 aaPredicted RBP20.79■□□□□ 0.92
LTBP4-202ENST00000243562 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
LTBP4-202ENST00000243562 ITGAEP38570 1179 aa20.73■□□□□ 0.91
LTBP4-202ENST00000243562 DHX57Q6P158 1386 aaKnown RBP20.7■□□□□ 0.9
LTBP4-202ENST00000243562 PRXQ9BXM0 1461 aa20.7■□□□□ 0.9
LTBP4-202ENST00000243562 CLSPNQ9HAW4 1339 aa20.69■□□□□ 0.9
LTBP4-202ENST00000243562 ARAP1Q96P48 1450 aa20.68■□□□□ 0.9
LTBP4-202ENST00000243562 KIF27Q86VH2 1401 aa20.66■□□□□ 0.9
LTBP4-202ENST00000243562 ERICH3Q5RHP9 1530 aa20.65■□□□□ 0.9
LTBP4-202ENST00000243562 BIVM-ERCC5R4GMW8 1640 aa20.64■□□□□ 0.89
LTBP4-202ENST00000243562 CUX1P39880 1505 aa20.59■□□□□ 0.89
LTBP4-202ENST00000243562 CCNB3Q8WWL7 1395 aa20.55■□□□□ 0.88
LTBP4-202ENST00000243562 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
LTBP4-202ENST00000243562 RRBP1Q9P2E9 1410 aaKnown RBP20.53■□□□□ 0.88
LTBP4-202ENST00000243562 ARHGAP35Q9NRY4 1499 aa20.49■□□□□ 0.87
LTBP4-202ENST00000243562 ATP1B4Q9UN42 357 aaPredicted RBP20.48■□□□□ 0.87
LTBP4-202ENST00000243562 HMGXB3Q12766 1538 aa20.47■□□□□ 0.87
LTBP4-202ENST00000243562 PRKCSHP14314 528 aaPredicted RBP20.46■□□□□ 0.87
LTBP4-202ENST00000243562 CFTRP13569 1480 aa20.46■□□□□ 0.87
LTBP4-202ENST00000243562 CUX2O14529 1486 aa20.44■□□□□ 0.86
LTBP4-202ENST00000243562 FAM50AQ14320 339 aaKnown RBP20.42■□□□□ 0.86
LTBP4-202ENST00000243562 P3H3Q8IVL6 736 aa20.42■□□□□ 0.86
LTBP4-202ENST00000243562 IGF1RP08069 1367 aa20.41■□□□□ 0.86
LTBP4-202ENST00000243562 RAB3GAP2Q9H2M9 1393 aa20.41■□□□□ 0.86
LTBP4-202ENST00000243562 CARMIL1Q5VZK9 1371 aa20.37■□□□□ 0.85
LTBP4-202ENST00000243562 SUPT16HQ9Y5B9 1047 aaKnown RBP20.37■□□□□ 0.85
LTBP4-202ENST00000243562 BCL11AQ9H165 835 aa20.37■□□□□ 0.85
LTBP4-202ENST00000243562 SIN3AQ96ST3 1273 aa20.32■□□□□ 0.84
LTBP4-202ENST00000243562 KCNH8Q96L42 1107 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms