Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.55■□□□□ 0.56
RNF4P78317 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF4P78317 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF4P78317 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.55■□□□□ 0.56
RNF4P78317 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF4P78317 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
RNF4P78317 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
RNF4P78317 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RNF4P78317 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RNF4P78317 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 AC128676.1-201ENST00000454392 318 ntBASIC18.54■□□□□ 0.56
RNF4P78317 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF4P78317 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.54■□□□□ 0.56
RNF4P78317 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.54■□□□□ 0.56
RNF4P78317 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 AC073648.6-201ENST00000641589 218 ntBASIC18.54■□□□□ 0.56
RNF4P78317 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RNF4P78317 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
RNF4P78317 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RNF4P78317 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.54■□□□□ 0.56
RNF4P78317 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
RNF4P78317 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
RNF4P78317 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF4P78317 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF4P78317 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF4P78317 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF4P78317 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RNF4P78317 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.53■□□□□ 0.56
RNF4P78317 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF4P78317 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF4P78317 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF4P78317 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
RNF4P78317 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.52■□□□□ 0.56
RNF4P78317 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.52■□□□□ 0.56
RNF4P78317 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.52■□□□□ 0.56
RNF4P78317 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF4P78317 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF4P78317 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF4P78317 GABARAPL3-202ENST00000624044 1851 ntBASIC18.52■□□□□ 0.55
RNF4P78317 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF4P78317 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.52■□□□□ 0.55
RNF4P78317 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF4P78317 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
RNF4P78317 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF4P78317 AC069544.1-201ENST00000609399 999 ntBASIC18.51■□□□□ 0.55
RNF4P78317 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF4P78317 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF4P78317 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF4P78317 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF4P78317 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 447.8 ms