Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NBPF21P-201ENST00000425093 1451 ntBASIC19.85■□□□□ 0.77
LIMK1P53667 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LIMK1P53667 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMK1P53667 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.84■□□□□ 0.77
LIMK1P53667 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.84■□□□□ 0.77
LIMK1P53667 AC091076.1-201ENST00000610741 619 ntBASIC19.84■□□□□ 0.77
LIMK1P53667 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMK1P53667 CYP2D8P-201ENST00000433633 1490 ntBASIC19.84■□□□□ 0.77
LIMK1P53667 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LIMK1P53667 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMK1P53667 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
LIMK1P53667 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.83■□□□□ 0.77
LIMK1P53667 TPM4P1-201ENST00000436100 807 ntBASIC19.83■□□□□ 0.77
LIMK1P53667 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMK1P53667 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMK1P53667 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.83■□□□□ 0.77
LIMK1P53667 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
LIMK1P53667 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
LIMK1P53667 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
LIMK1P53667 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIMK1P53667 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMK1P53667 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMK1P53667 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 UPK3BP1-201ENST00000428678 509 ntBASIC19.82■□□□□ 0.76
LIMK1P53667 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
LIMK1P53667 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMK1P53667 WWOX-216ENST00000569818 525 ntBASIC19.82■□□□□ 0.76
LIMK1P53667 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIMK1P53667 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.82■□□□□ 0.76
LIMK1P53667 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
LIMK1P53667 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMK1P53667 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIMK1P53667 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.82■□□□□ 0.76
LIMK1P53667 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMK1P53667 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LIMK1P53667 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMK1P53667 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LIMK1P53667 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMK1P53667 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 AC116562.2-201ENST00000507042 360 ntBASIC19.81■□□□□ 0.76
LIMK1P53667 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.81■□□□□ 0.76
LIMK1P53667 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LIMK1P53667 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.81■□□□□ 0.76
LIMK1P53667 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.81■□□□□ 0.76
LIMK1P53667 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIMK1P53667 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LIMK1P53667 FAM99A-202ENST00000538190 1989 ntBASIC19.81■□□□□ 0.76
LIMK1P53667 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LIMK1P53667 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMK1P53667 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMK1P53667 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMK1P53667 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMK1P53667 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.8■□□□□ 0.76
LIMK1P53667 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.8■□□□□ 0.76
LIMK1P53667 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMK1P53667 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIMK1P53667 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.8■□□□□ 0.76
LIMK1P53667 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms