Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHOX2O60902 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.08■□□□□ 0.8
SHOX2O60902 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHOX2O60902 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHOX2O60902 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.07■□□□□ 0.8
SHOX2O60902 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SHOX2O60902 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.07■□□□□ 0.8
SHOX2O60902 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SHOX2O60902 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.07■□□□□ 0.8
SHOX2O60902 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.07■□□□□ 0.8
SHOX2O60902 AL117332.1-201ENST00000622628 974 ntBASIC20.07■□□□□ 0.8
SHOX2O60902 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHOX2O60902 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.07■□□□□ 0.8
SHOX2O60902 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
SHOX2O60902 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SHOX2O60902 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SHOX2O60902 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.07■□□□□ 0.8
SHOX2O60902 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.06■□□□□ 0.8
SHOX2O60902 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SHOX2O60902 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.06■□□□□ 0.8
SHOX2O60902 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHOX2O60902 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.06■□□□□ 0.8
SHOX2O60902 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
SHOX2O60902 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.05■□□□□ 0.8
SHOX2O60902 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
SHOX2O60902 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
SHOX2O60902 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.05■□□□□ 0.8
SHOX2O60902 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.05■□□□□ 0.8
SHOX2O60902 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.05■□□□□ 0.8
SHOX2O60902 MIR3181-201ENST00000578512 73 ntBASIC20.05■□□□□ 0.8
SHOX2O60902 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.05■□□□□ 0.8
SHOX2O60902 FZD10-202ENST00000539839 3282 ntBASIC20.05■□□□□ 0.8
SHOX2O60902 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.05■□□□□ 0.8
SHOX2O60902 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHOX2O60902 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SHOX2O60902 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.05■□□□□ 0.8
SHOX2O60902 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
SHOX2O60902 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.04■□□□□ 0.8
SHOX2O60902 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.04■□□□□ 0.8
SHOX2O60902 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.04■□□□□ 0.8
SHOX2O60902 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SHOX2O60902 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 UNC93B8-201ENST00000511903 705 ntBASIC20.04■□□□□ 0.8
SHOX2O60902 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
SHOX2O60902 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHOX2O60902 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.04■□□□□ 0.8
SHOX2O60902 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.03■□□□□ 0.8
SHOX2O60902 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.03■□□□□ 0.8
SHOX2O60902 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.03■□□□□ 0.8
SHOX2O60902 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHOX2O60902 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms