Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CHKB-CPT1BH3BT56 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC11.18□□□□□ -0.62
CHKB-CPT1BH3BT56 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CHKB-CPT1BH3BT56 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 BID-204ENST00000399767 2129 ntTSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 AC067930.6-201ENST00000623257 4947 ntBASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC11.17□□□□□ -0.62
CHKB-CPT1BH3BT56 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 AC068418.2-201ENST00000577309 3703 ntBASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 AL353803.4-201ENST00000565882 1934 ntBASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 AC148477.6-201ENST00000623746 465 ntBASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CHKB-CPT1BH3BT56 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 AC116562.4-201ENST00000641316 2276 ntBASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 AC018470.1-201ENST00000624790 3129 ntBASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms